Conserved Protein Domain Family
7tmA_5-HT1A_vertebrates

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cd15330: 7tmA_5-HT1A_vertebrates 
serotonin receptor subtype 1A from vertebrates, member of the class A family of seven-transmembrane G protein-coupled receptors
The 5-HT1 receptors, one of 14 mammalian 5-HT receptors, is a member of the class A of GPCRs and is activated by the endogenous neurotransmitter and peripheral signal mediator serotonin (5-hydroxytryptamine, 5-HT). The 5-HT1 receptors mediate inhibitory neurotransmission by coupling to G proteins of the G(i/o) family, which lead to a decrease in adenylate cyclase activity, thereby decreasing intracellular cAMP levels and calcium influx. The 5-HT1 receptor subfamily includes 5 subtypes: 5-HT1A, 5-HT1B, 5-HT1D, 5-HT1E, and 5-HT1F. There is no 5-HT1C receptor subtype, as it has been reclassified as the 5-HT2C receptor. In the CNS, serotonin is involved in the regulation of appetite, mood, sleep, cognition, learning and memory, as well as implicated in neurologic disorders such as migraine, schizophrenia, and depression.
Statistics
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PSSM-Id: 320453
Aligned: 4 rows
Threshold Bit Score: 476.008
Created: 13-Nov-2008
Updated: 25-Oct-2021
Structure
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Aligned Rows:
  next features
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to Human 5-HT1B G protein-coupled receptor bound to the agonist antimigraine medications dihydroergotamine and ergotamine.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                ##  #
P08908     37 VITSLLLGTLIFCAVLGNACVVAAIALERSLQnvANYLIGSLAVTDLMVSVLVLPMAALYQVLnkWTLGqvtCDLFIALD 116 human
O42385     46 IITSLFLGALILCSIFGNSCVVAAIALERSLQnvANYLIGSLAVTDLMVSVLVLPMAALYQVLnkWTLGqdiCDLFIALD 125 torafugu
Q98998     31 IIASLFLGRSFSAGIFGNACVIAAIALERSLQnvANYLIGSLAVTDLMVSVLVLPMAAQNQVLnkWTLGqvtCDIFISLD 110 African clawed frog
ACZ72922   31 LLTSLLLGTLILCAVSGNACVIAAIALERSLQtvANYLIGSLAVTDLMVSVLVLPMAALYQVLnkWTLGqviCDIFISLD 110 chicken
Feature 1     #  ##                                                                 #         
P08908    117 VLCCTSSILHLCAIALDRYWAITDPiDYVNKRtPRRAAALISLTWLIGFLISIPPMLGWRTPEDrsdPDACTIskDHGYT 196 human
O42385    126 VLCCTSSILHLCAIALDRYWAITDPiDYVNKRtPRRAAVLISVTWLIGFSISIPPMLGWRSAEDranPDACIIsqDPGYT 205 torafugu
Q98998    111 VLCCTSSILHLCAIALDRYWAITDPiDYVNKRtPRRAAVLISITWIVGFSISIPPMLGWRTPEDrsdPNACRIseDPGYT 190 African clawed frog
ACZ72922  111 VLCCTSSILHLCAIALDRYWAITDPiDYVNKRtPRRAAVLISLTWLIGFLISIPPMLGWRTPEDrsnPDACTIskDHGYT 190 chicken
Feature 1       #   #                                                                         
P08908    197 IYSTFGAFYIPLLLMLVLYGRIFRAArfrirktvkkvektgadtrhgaspapqpkksvngesgsrnwrlgveskaggalc 276 human
O42385    206 IYSTFGAFYIPLILMLVLYGRIFKAArfrirktvkktekakasdmcltlspavfhkrangdavsaewkrgykfkpsspca 285 torafugu
Q98998    191 IYSTFGAFYIPLILMLVLYGKIFKAArfrirktvkkaekkkvadtclsvsqqspkekqrgaqqeleevggaqaqrcvnga 270 African clawed frog
ACZ72922  191 IYSTFGAFYIPLLLMLVLYGRIFKAArfrirktvkkaekkkiadtcltlspaalqkksngepgkgwrrtveprsgacvng 270 chicken
Feature 1                                                                                     
P08908    277 angavrqgddgaalevievhrvgnskehlplpseagptpcapasferknernaeakrkmalARERKTVKTLGIIMGTFIL 356 human
O42385    286 --------ngavrhgeemesleiievnsnskthlplpntpqsssheninekttgtrrkialARERKTVKTLGIIMGTFIF 357 torafugu
Q98998    271 -------irhgeegavleiievhhyvnskchlhckpvpppeqlppalkndrateakrkvalARERKTVKTLGIIMGTFIL 343 African clawed frog
ACZ72922  271 av---rqgedgaalevievqrcsssskthlplpseacgsppppsferrneknteakrrmalSREKKTVKTLGIIMGTFIL 347 chicken
Feature 1      #  ##     #          #  ##  #   #                     
P08908    357 CWLPFFIVALVLPFCessCHMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAF 411 human
O42385    358 CWLPFFIVALVLPFCaenCYMPEWLGAVINWLGYSNSLLNPIIYAYFNKDFQSAF 412 torafugu
Q98998    344 CWLPFFIVALVLPFCe-tCHMPHLLFDIITWLGYSNSLLNPIIYAYFNKDFQSAF 397 African clawed frog
ACZ72922  348 CWLPFFIVALVLPFCdskCYMPEWLGAVINWLGYSNSLLNPIIYAYFNKDFQSAF 402 chicken

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