Conserved Protein Domain Family
7tmA_Mel1C

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cd15401: 7tmA_Mel1C 
melatonin receptor subtype 1C, member of the class A family of seven-transmembrane G protein-coupled receptors
Melatonin (N-acetyl-5-methoxytryptamine) is a naturally occurring sleep-promoting chemical found in vertebrates, invertebrates, bacteria, fungi, and plants. In mammals, melatonin is secreted by the pineal gland and is involved in regulation of circadian rhythms. Its production peaks during the nighttime, and is suppressed by light. Melatonin is shown to be synthesized in other organs and cells of many vertebrates, including the Harderian gland, leukocytes, skin, and the gastrointestinal (GI) tract, which contains several hundred times more melatonin than the pineal gland and is involved in the regulation of GI motility, inflammation, and sensation. Melatonin exerts its pleiotropic physiological effects through specific membrane receptors, named MT1A, MT1B, and MT1C, which belong to the class A rhodopsin-like G-protein coupled receptor family. MT1A and MT1B subtypes are present in mammals, whereas MT1C subtype has been found in amphibians and birds. The melatonin receptors couple to G proteins of the G(i/o) class, leading to the inhibition of adenylate cyclase.
Statistics
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PSSM-Id: 320523
Aligned: 3 rows
Threshold Bit Score: 515.23
Created: 11-Dec-2013
Updated: 25-Oct-2021
Structure
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Aligned Rows:
  next features
Feature 1:putative ligand binding pocket [chemical binding site]
Evidence:
  • Comment:based on the structures of some class A family members with bound ligands (peptides or chemicals), agonists, or antagonists
  • Comment:Small-molecule chemical ligands tend to bind deeper within the receptor core, compared to a peptide ligand neurotensin, which binds towards the extracellular surface of its receptor.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                #  ##           ###### #
P49288        25 SGLAAVLIVTIVVDVLGNALVILSVLRNKKLRNaGNIFVVSLSVADLVVAVYPYPLILSAIfhngWTMGnihCQISGFLM 104 chicken
P49219        33 SALAVVLIFTIVVDVLGNILVILSVLRNKKLQNaGNLFVVSLSIADLVVAVYPYPVILIAIfqngWTLGnihCQISGFLM 112 African clawed ...
XP_005991926  32 IVLAGLLIFTIVVDILGNLLVILSIFRNKKLRNpGNIFVVSLAVADLFVAVYPFPLDLLAIlhdgWILGdihCQISGFLT 111 coelacanth
Feature 1        #  #                                            # #####                     #  #
P49288       105 GLSVIGSIFNITAIAINRYCYICHslrYDKLFnlKNTCCYICLTWTLTVVAIVPNFFVGslqYDPRIYSCTFaqtvSTSY 184 chicken
P49219       113 GLSVIGSVFNITAIAINRYCYICHslrYDKLYnqRSTWCYLGLTWILTIIAIVPNFFVGslqYDPRIFSCTFaqtvSSSY 192 African clawed ...
XP_005991926 112 GLSVIGSVFNITAIAINRYFFICHslkYDRLYnmKKTCCYVCLTWVLTLAAILPNFYAGslkYDPRVYSCTFaqtvSSSY 191 coelacanth
Feature 1        ## ### ##                                                      #  ## ##  #      
P49288       185 TITVVVVHFIVPLSIVTFCYLRIWILVIqvkhrvrqdckqkirAADIRNFLTMFVVFVLFAVCWGPLNFIGLAVSINPsk 264 chicken
P49219       193 TITVVVVHFIVPLSVVTFCYLRIWVLVIqvkhrvrqdfkqkltQTDLRNFLTMFVVFVLFAVCWAPLNFIGLAVAINPfh 272 African clawed ...
XP_005991926 192 TIIVVVVHFMLPLTIVAFCYLQIWVLVIqvkhrvrkdsqqklkANQIRNFLTMFVVFVLFAVCWGPLNFIGLAVATNPlk 271 coelacanth
Feature 1             ## ###  #  ##                     
P49288       265 vqphIPEWLFVLSYFMAYFNSCLNAVIYGLLNqNFRKEY 303 chicken
P49219       273 vapkIPEWLFVLSYFMAYFNSCLNAVIYGVLNqNFRKEY 311 African clawed frog
XP_005991926 272 mapkIPEWLFVTSYFMAYFNSCLNALVYGVLNqNFRNEY 310 coelacanth

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