4I2X,2WNG


Conserved Protein Domain Family
IgC1_SIRP_domain_3

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cd16085: IgC1_SIRP_domain_3 
Signal-regulatory protein (SIRP) immunoglobulin-like domain 3; member of the C1-set of Ig superfamily (IgSF) domains
The members here are composed of the immunoglobulin (Ig)-like domain in Signal-Regulatory Protein (SIRP), domain 3 (C1 repeat 2). The SIRPs belong to the "paired receptors" class of membrane proteins that comprise several genes coding for proteins with similar extracellular regions but very different transmembrane/cytoplasmic regions with different (activating or inhibitory) signaling potentials. They are commonly on NK cells, but are also on many myeloid cells. Their extracellular region contains three Immunoglobulin superfamily domains a single V-set and two C1-set IgSF domains. Their cytoplasmic tails that contain either ITIMs or transmembrane regions that have positively charged residues that allow an association with adaptor proteins, such as DAP12/KARAP, containing ITAMs. There are 3 distinct SIRP members: alpha, beta, and gamma. SIRP alpha (also known as CD172a or SRC homology 2 domain-containing protein tyrosine phosphatase substrate 1/Shps-1) is a membrane receptor that interacts with a ligand CD47 expressed on many cells and gives an inhibitory signal through immunoreceptor tyrosine-based inhibition motifs in the cytoplasmic region that interact with phosphatases SHP-1 and SHP-2. SIRP beta has a short cytoplasmic region and associates with a transmembrane adapter protein DAP12 containing immunoreceptor tyrosine-based activation motifs to give an activating signal. SIRP gamma contains a very short cytoplasmic region lacking obvious signaling motifs but also binds CD47, but with much less affinity.
Statistics
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PSSM-Id: 409507
Aligned: 16 rows
Threshold Bit Score: 154.503
Created: 22-Apr-2015
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:intrachain IgC domain interface [polypeptide binding site]
Evidence:
  • Structure:4I2X: human SIPR gamma C1 and C2 domains form an intrachain IgC domain interface, contacts at 4A
    View structure with Cn3D
  • Structure:2WNG: human SIPR alpha C1 and C2 domains form an intrachain IgC domain interface, contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        ##                         ##      ####                    ###                  
4I2X_E       222 VPPTLEVTQQPMRvgnqVNVTCQVRKFYPQSLQLTWSENGNVCQre-------tASTLTENKDGTYNWTSWFLVNISDQR 294 human
P97710       253 VSPTLKITQQPLTpasqVNLTCQVQKFYPKALQLNWLENGNLSRtd-------kPEHFTDNRDGTYNYTSLFLVNSSAHR 325 Norway rat
P97797       253 VSPTVKVTQQSPTsmnqVNLTCRAERFYPEDLQLIWLENGNVSRnd-------tPKNLTKNTDGTYNYTSLFLVNSSAHR 325 house mouse
BAD01048     250 VPPTLEISQQPTMvwnvIIGTCQIQKFYPPRFQVTWLENGNISRre-------vPFTLIVNKDGTYNWISCLLVNVSALE 322 house mouse
XP_004476743 251 VQPTLMMMQHSMPgn-qVNVTCQVERFYPQKVQLTWLENGNMSRte-------tASSPLENKDGTYNLSSWLLVNSSAHR 322 nine-banded arm...
XP_005066776 345 VPPTLEMSQQPSEvrnlTYIACHVKKFYPLRLRLSWFENGNISRie-------ePSTFTVNKDGTYSWNTWLLLKTSAQE 417 golden hamster
XP_005348282 248 VSPTLEISEQPSViwnlIGVTCQVNKFYPSKLRLTWIENGNISHte-------dPSTFTVNKDGTYSWTSWHIVNVSAHE 320 prairie vole
XP_005365695 250 VSPILDVTEQSTStgnqANVTCRVQKFFPNKLRLIWLENGNVSRtd-------eALNATVNGDGTYNWTSCLLVNKSAHR 322 prairie vole
ERE69828     250 VSPSLDVTQQPTMaenqLNVTCHVQKFYPNKLKLIWLENGNISRienssipvnnTYSQTVNKDGTYNWTSWLLVNKSAYR 329 Chinese hamster
XP_007650863 264 FPPTVEVSQQXSMiwnlIGVTCQVNDFXPSRIWLTWLESGNISRte-------dLSTFTVNKDGTYSXTSLFLVNVSAHA 336 Chinese hamster
Feature 1                  ## #         
4I2X_E       295 DDVVLTCQVKHDGQLAVSKRLAL 317 human
P97710       326 EDVVFTCQVEHDSQPAITENHTV 348 Norway rat
P97797       326 EDVVFTCQVKHDQQPAITRNHTV 348 house mouse
BAD01048     323 ENMVVTCQVEHDGQAEVIETHTV 345 house mouse
XP_004476743 323 EGVKVTCQVEHDGQPAVSSQLTL 345 nine-banded armadillo
XP_005066776 418 GNLVVTCQVEHDGQPPIIKTHTV 440 golden hamster
XP_005348282 321 EDIILTCQVEHDQQPQEITTHTV 343 prairie vole
XP_005365695 323 ENVVVTCQVDHDGKPAIAKNYTV 345 prairie vole
ERE69828     330 ENVVFTCQVEHDGKLVGTKNHTV 352 Chinese hamster
XP_007650863 337 EHITLTCQVEHDGQPPVLXSHTL 359 Chinese hamster

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