2MXF


Conserved Protein Domain Family
MvaT_DBD

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cd16170: MvaT_DBD 
Click on image for an interactive view with Cn3D
DNA-binding domain of the bacterial xenogeneic silencer MvaT
MvaT is a xenogeneic silencer conserved in Pseudomonas which assists in distinguishing foreign from self DNA. It prefers binding to flexible DNA segments with multiple TpA steps, and forms nucleoprotein filaments through cooperative polymerization.
Statistics
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PSSM-Id: 320084
View PSSM: cd16170
Aligned: 23 rows
Threshold Bit Score: 61.9992
Threshold Setting Gi: 553790036
Created: 18-Aug-2016
Updated: 18-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
 
DNA binding
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
Feature 1        ## # #          #####  # ##  #        #    
2MXF_A         5 RKVKQYKNPHTGEVIETKGGNh-KTLKEWKAKWGpEAVESWAT 46
gi 738657637  73 RTPTKYKNPETGEVIEVRGGRq-KNYQDWIQQYGkETVQGWRL 114
gi 518303029  84 RRSKYYINPHTGQEVEAKSTLh-KTVRLWIQQYGrEEVESWAT 125
gi 515998784  78 KPTRHYRNPHNGETVQAKSFRn-ATLREWVKQYSrETVEGWEV 119
gi 765290541 121 LEIGIYTNPHTQQTVEKKRRNp-KELDAWLDEYGyDTVVAWKQ 162
gi 521083515 117 LETGHYRNPYTGATVEKKKRNp-KALSQWIDEYGlDTVKEWKI 158
gi 738625474 111 LEVGEYTNPNTGETVEKIKRNp-RQLDQWIAEHGiETVKGWKS 152
gi 739477499 110 LDIGVYVHPNTGERIEKKRRNp-KTLDEWIEAFGiEEVAQWRE 151
gi 553790036  77 FKKKVYTNPQTGQQVHRAGGPfpSLLKSWMDAHGkEEVESWAK 119
gi 766996033  48 QAKKTYRNPFNGHCIHLRAGKn-LTYRAWILQYGeATVESWLI 89

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