2IDL,1S12,2IDL,2G0J,2G0J,2G0I,4PEO,4PEO


Conserved Protein Domain Family
YsxB-like

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cd16332: YsxB-like 
Click on image for an interactive view with Cn3D
conserved uncharacterized protein similar to Bacillus subtilis YsxB
family of conserved uncharacterized proteins similar to Bacillus subtilis YsxB
Links
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Statistics
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PSSM-Id: 319990
View PSSM: cd16332
Aligned: 624 rows
Threshold Bit Score: 54.4123
Threshold Setting Gi: 524508454
Created: 18-Aug-2016
Updated: 18-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
 
putative activehomodimer
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1: putative active site [active site], 3 residue positions
Conserved feature residue pattern:H C SClick to see conserved feature residue pattern help
Evidence:
  • Comment:triad of highly conserved residues
  • Comment:a large cleft between the first alpha-helix and the second beta-strand may be functionally important, since the two highly conserved motifs, GHA and VCAXV[ST], are located around the cleft

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Feature 1                               #                #   #                                   
2IDL_A         4 MIQAVFERaed--gelRSAEITGHAesge-----yglDVVCASVSTLAINFINSIEkfag----yepILELNedegGYLM 72
gi 524375068   1 MICAVFGE--------NRVTLRGHAgyap-----pgeDIVCAAASALVFALIGALEekg-----llrELVVRp---GFVT 59
gi 524058860   1 MIEVWLDR--------TALTVRGHAgfsr-----ygsDIVCAAASMLAFALAEAVQaag-----mktPPVIEsg-cGRFR 61
gi 524492946   1 MVEITYREir----ngFELKAEGHCryae-----kgkDIACAGVSTLIVALAKTLEenenklkipalIIVED----GYAL 67
gi 492737516   1 MITIIYDEkg----kdMSLQASGHAgyap-----kgqDIVCAAVSTLMQSLAYSVDsg--------tVTCDPgg-dNILR 62
gi 257199076  20 MIKVNYTEldgpygpaMRLEAAGHAgyap-----agqDIVCAGVSTLMQALVSLLAgeen---ahsdAFDEPd--gPRLT 89
gi 639755673   1 MTHVYITNgm----gyARVKIEGHAgygaanhlpeghDLVCASVSILGQTAMQIAIdmeqekkvsiaQMTCTp---GLID 73
gi 488641689   1 MTKVNMLFdk----gyVKITMKGHAgfaarnnlpeghDIVCAAISILGQTLVQRLLtlaeekkillsLNRYEa---GNID 73
gi 524643862   1 MTKVIERRen----evIDFIIGGHAekvn----pdegNILCAAVSMLGQTLLECLWrmd-----anvRTESRd---GHIA 64
gi 524508454   1 MTRVRIDKsg----lgRDIYITGHCa----------nESSGSAEATLVCAAMTTLAqti-----aqnVFDSEdtgdTDII 61
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
Feature 1                                                     
2IDL_A        73 VEIPkdlp-----shqrEMTQLFFESFFLGMANLSENYseFVQTR 112
gi 524375068  60 VAAE-------------GDCQAEWQLIRCGLGQLAGKYpaCVRLE 91
gi 524058860  62 LEAFadg-------qeqARLDGMFETVRAGYRLLSARYpeHVRVL 99
gi 524492946  68 ICAYpkk-------ryyKEIASAFETVKQGVSWLSEEFekNVKKL 105
gi 492737516  63 VQANr-----------sLDTLAKFELVIDGLYLLAQQYpeNVQLM 96
gi 257199076  90 VTAArp---------ctAWVEGAFELAKAGFALLAERYpdNVCFA 125
gi 639755673  74 LRILpks-------ahaQELQDKIEAIRTGFEILSSTFsdYVKMG 111
gi 488641689  74 AHAVvkq-------shiEEVEATLETIRVGYSMLENEYpdYIKLG 111
gi 524643862  65 VRFYpdd-------ensEEIENLLKFTKTGFCLLKSRYpeQFDLV 102
gi 524508454  62 DVTLrsgqavisyvtddDGLNTAVDGICKGFDMLEENYpeYVSCY 106

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