3RPU,3EUH


Conserved Protein Domain Family
MukF_N

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cd16335: MukF_N 
Click on image for an interactive view with Cn3D
bacterial condensin complex subunit MukF, N-terminal domain
MukF is part of the MukBEF condensin complex that is mainly found in proteobacteria and is involved in chromosome organization and condensation. The complex is believed to serve as a part of the chromosome scaffold rather than a bulk DNA packing protein. MukE and MukF form a stable complex with each other and dynamically associate with MukB, a member of the SMC protein family. MukEF does not bind DNA on its own but modulates MukB-DNA activity. The stoichiometry of the MukEF complex is MukE4F2.
Statistics
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PSSM-Id: 319981
Aligned: 18 rows
Threshold Bit Score: 308.807
Created: 29-Mar-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
homodimerMukE-MukF
Conserved site includes 58 residues -Click on image for an interactive view with Cn3D
Feature 1:homodimer interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          ##  ###### #  ##      # #                #               #                    
3RPU_A        33 AWARKNDFSISLPVDRLSFLLAVATLNger---------ldgEMSEGELVDAFRHVSDAFEqt---------seTIGVRA 94  Escherichia col...
WP_020582074  12 STILTQGISLKLQPADLAYLAALRYWKete---------sqpEFSEEELHVVFQSVEKARLddn--------sdDSSKRC 74  Endozoicomonas ...
AGP36475       8 ASLQRSRAALKLDTADLCYLVALRARAera---------alaSFEEDLLVDVFEQICEITDpg---------aeNPRKRA 69  Sorangium cellu...
GAA19675      26 ASLVRDQVNLDLKTADVCFLAGLYLRAdka---------glaSFEEDLLIDLFEQVCDVVEpa---------aeNPRKRA 87  Pseudomonas aer...
WP_034872798  12 SEILTSGQKIQLQPADLAFLAALRFWKdqe---------sqpEFSEEELHLVFETVDRQDLgal--------edSRQRRC 74  Endozoicomonas ...
AKV03766      11 TSLHRRGVALELHTLDLCFLAALHVRAers---------gmsSFQEDQLLDVFDQVVALTKegr-------gegGAKKRA 74  Sorangiineae ba...
WP_031494444  56 RDLISRGFTYDLSPLEMAFLAGVVLWPdtdlql---sncadnHVEEAHLFEVYARVDGIFVahgdptlmdykvqTRDQRA 132 Vibrio shilonii
WP_018079145  14 QTVLDDGLSLDLWPRDVALLVLIQKKMnsgt-------gfsfAMEGGELRSLAAKVDGLEVkd---------ssGTEKRL 77  Thiobacillus de...
WP_041412633  12 NQVRMNEPALHIEPNEYLYLAAMSLWNvndddd---yrlvdpGYKEEQCNEIFSYVDRWLGqd----------dITSFRT 78  Shewanella sp. ...
WP_036778229  20 FQISSRQPTLHLTTNEFSYLAAMTTWDlvtdeqdseyhfiqsGFDETTCHSIIRYVDERINed---------laTTDVRV 90  Photorhabdus lu...
Feature 1               #     #####         # ##### # #  ## #       # ##  ##  #   #              
3RPU_A        95 NNAINDMVRqrLLNRFTSEQAe--GNAIYRLTPLGIGITDYYIRqr---efSTLRLSMQLSIVAGELKRAADAAEEggd- 168 Escherichia col...
WP_020582074  75 NDVIRRLLQqhLLICLEGGDQ---RNHAYLITPLSEQIVDSVCVgm---eaSQEALSTLFMTVASHLREIRDSAEQggn- 147 Endozoicomonas ...
AGP36475      70 THAIQRLREqrLLARVDGAGLv--RAGEYTLTRLAAAVVDFFFDde---alTRESLTLLTGVLAAQLVQVLGAARSaat- 143 Sorangium cellu...
GAA19675      88 THAIQRLREqrMLARVDGAGIv--RAGEYALTRLAAAVIEYFLAde---alTRESLSLLTGTLRAQLADILATARKahn- 161 Pseudomonas aer...
WP_034872798  75 NDTLRRLLEqhLLICLESGGK---RPHAYLLPPVSEQIVESICTgl---daSQTALRTLFTTVAGHLQEIHEAARQdgn- 147 Endozoicomonas ...
AKV03766      75 THVVRRLRDqkLLVRVDGAGVt--RAGEYALTRLATGIIGFYLEdd---alTRESLDVLAGTLTACLEGVLAATRAads- 148 Sorangiineae ba...
WP_031494444 133 NHAVGRLVLmgLLRRITLSET---NQTLYSLSPVAHDLVDLAYNyrldeeaTKQSLSLSYREVRTELVALRERSDAind- 208 Vibrio shilonii
WP_018079145  78 TESINRLIRanCLARADLSRLrniEDTEYQLTSLGESIASWHIEh------TRFSGEPMAAILQVFNGQIVDLHAKalnl 151 Thiobacillus de...
WP_041412633  79 SNFLKRAVEqgLVMQAGSSLRn--ADGFYRLTQLSHDLLKPFTGdt---liQKESLSQRYVRLEILLGNLLVLKIEd--- 150 Shewanella sp. ...
WP_036778229  91 NNFLKRALEqgLLSLAGTSVAd--VGGTYRLTQLAHDLLKPFHQpde--saDTETLSQRYLRIDHELSNLNALSDTeni- 165 Photorhabdus lu...
Feature 1              #    ## ###  #  #   #  ## ## ##  #                                        
3RPU_A       169 --efHWHRNVYAPLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNk---DWRAAISSCELLLSETSGTLRELQDTLE 243 Escherichia col...
WP_020582074 148 --epFWKHQVESPLNITVNQLVTSIDHRQRQLDQEAINTRKEVVELLKq---DWQNSISQCEQLLTSTQSHLQDLQRLLL 222 Endozoicomonas ...
AGP36475     144 --aeAWRAEVVAPLQITVRDLVAGIERRQCGLDLQQEEIRERIGALLQs---DWFRAVETCEELLEATASTLRELNEVLL 218 Sorangium cellu...
GAA19675     162 --deDWRQRVVAPLRITVGDMVAGIERRQRGLDAQQEEIQAEIASLLSn---DWFSAIDRCQSLLDATTHTLRELNEILL 236 Pseudomonas aer...
WP_034872798 148 --dqFWKLQIEAPLDITVRQLVTAIDHRQRQLDTEAITTRKEVVSLLKh---DWQNAIARCEALLVDTQERLQDLQQLLL 222 Endozoicomonas ...
AKV03766     149 --eeAWRTGVIGPLRVTIFELAGGIERRQRGFDLQQEEFQREIAALLAa---DWFGAVERCTKLLDTTSAMLHELNDILL 223 Sorangiineae ba...
WP_031494444 209 --pnEFTIHIGNRLRSLVSGALEQINRQQTMLLGSMDHNGRQLQEKVTqtrnIDMSVFTALFEMMQITAQQIQDLCDVMN 286 Vibrio shilonii
WP_018079145 152 egdeDWRRDILLPMQVVLKDMLVNVQRHQRELDRQHEALRAFIPTLLTe---NSEASIDQCEQQLTQVIRTIDDLQEVTL 228 Thiobacillus de...
WP_041412633 151 ---dEEWANEIKAQLPSFRDLLDGINKNQEALIKGFQLQRSSIQSAASg---SLAQQMQHLIELIDEIAGQIRDLKSLIL 224 Shewanella sp. ...
WP_036778229 166 --ttEEWLEKVQCFLPSLKDLLEGVFRNQELLISRFHSMRSALQNGMDt---SLETEMQQLLEAVQTLAEQINDLRMLVM 240 Photorhabdus lu...
Feature 1                                              #   #      #                              
3RPU_A       244 AAGDKLQANLLRIqdatmthddlhfvdrLVFDLQSKLDRIISWGQQSIDLWIGYDRHVHKFIRTAIDMdknrVFAQRLRQ 323 Escherichia col...
WP_020582074 223 ASCHELRSLLEAIsrsceqs-qrsdainSVLRLEQHLDRIEHWSGERMNHWEGFHHRVHQYLRQFVTMderkALMERVRE 301 Endozoicomonas ...
AGP36475     219 RDTGHIQARLQEIeqlaadr-gtpeaaeAAQRAAEHVDRVSAWGRDRQRAWSEYYQYVQRFLRDVVRLdrdrALSQRLRD 297 Sorangium cellu...
GAA19675     237 RDTHHFVALLQDIqalavsa-enveaegAAQRVIEHVDRIGAWGGARQKAWSEYYQYVHRYLRDVVRLdpdrALSQRLRD 315 Pseudomonas aer...
WP_034872798 223 ASCHELRQLLESIgqhceka-qrlsavqSVVRLEHHLDRIEHWSSERLEHWENFHQRTHQYLRQFINMderkALMERTLD 301 Endozoicomonas ...
AKV03766     224 RHGHRFGELLQEVleragda-eqeeaerAARDALDQVERLAAWGAARQRAWSDYHEWVHRYLRDVVRLdpsrTLVHRLRE 302 Sorangiineae ba...
WP_031494444 287 ETSGEIEASLNALiekagel-gldtqqqQLLMIQDNFSVHASWARQETIELIQFYRRLMAYLRSQLSIsqrqLFLDCLEL 365 Vibrio shilonii
WP_018079145 229 SSSSKAFELLYQIeiagenk-kiegvgpVCQDITRRMHSIVQWTAQRATDWVEHHGVVHDFLRSVIRId--rQRRLTEAL 305 Thiobacillus de...
WP_041412633 225 NGADNVLSLLHEIkemahnrnapirltnAMADIHDQLDSIRQFSGHSLLELAEFFEQVLSTIRLKITLdpnaNLNLLIEK 304 Shewanella sp. ...
WP_036778229 241 NRADAVLMQLELLqssvvqkagsrplqnALSALFDSLMEVREFANHSLKDLTWFFDTVLDRVRIRIALdpnaNLGYLIDR 320 Photorhabdus lu...
Feature 1                                 
3RPU_A       324 SVQTYFDEPWALTYANADRLLDMRD 348 Escherichia coli K12
WP_020582074 302 GIRNYQEMPWYLRYTHEEPLTRLRD 326 Endozoicomonas elysicola
AGP36475     298 QLVAWPDRPFALIAARAPSIRLLRP 322 Sorangium cellulosum So0157-2
GAA19675     316 QIAEWGNRPFHLLAAHAGSICLLRT 340 Pseudomonas aeruginosa NCMG1179
WP_034872798 302 ALQRYDQHPWHLRCAGDEPLIRLRE 326 Endozoicomonas montiporae
AKV03766     303 QLAGRAGKRYALTIASAAPFTLLRS 327 Sorangiineae bacterium B00002
WP_031494444 366 AIERFADQPWGLPIVERMPQVYLED 390 Vibrio shilonii
WP_018079145 306 KHAIAIPPDWSLRISLEPRLIRMRE 330 Thiobacillus denitrificans
WP_041412633 305 AVLQMDRMPWSISILAPDPVVELRD 329 Shewanella sp. ANA-3
WP_036778229 321 TIRLFDGSSWSLALPSSIRLMQLRE 345 Photorhabdus luminescens

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