4DWL,2GSC


Conserved Protein Domain Family
Avd_IVP_like

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cd16375: Avd_IVP_like 
Click on image for an interactive view with Cn3D
proteins similar to the diversity-generating retroelement protein bAvd
A superfamily of four-helix bundles that form homopentamers, including the bacterial accessory variability determinant (bAvd) protein and a family of functionally uncharacterized bacterial proteins, some of which are encoded by an atypically large intervening sequence present within some 23S rRNA genes.
Links
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Statistics
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PSSM-Id: 319867
Aligned: 3 rows
Threshold Bit Score: 120.858
Created: 18-Aug-2016
Updated: 18-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
 
pentamer
Conserved site includes 25 residues -Click on image for an interactive view with Cn3D
Feature 1:pentamer interface [polypeptide binding site]
Evidence:
  • Structure:4DWL: Avd molecule from Bordetella bacteriophage DGR forms homopentamer, contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1      #   #  ##  #   #           ## ## ##  #  ##  #   #              ##  ##  ## ##   
4DWL_A     19 IVERYERVISYLYPIAQSIPrk----hGVAREXFLKCLLGQVELFIVAGKsn----qVSKLYAADAGLAXLRFWLRFLAg 90  Bordetella phage B...
2GSC_A     16 AWRDSMELVEMIYRLTEVFPdq---erYGLTAQLRRAAVSIPSNIAEGAArrstpdySRFLSIARGSLSELDTQVQIAAr 92  Xanthomonas campes...
EFX60653    6 VYSKAYHLSESLLKCTAHFPkqhrptlGRRIEDSALDLATQLRRFLLGSA-------PRELPSLLATVDDLKVYLQLAHe 78  common water flea
Feature 1                                      
4DWL_A     91 iqkphaxTPHQVETAQVLIAEVGRILGSWIARV 123 Bordetella phage BPP-1
2GSC_A     93 lg---ysRSEDDQSVRRQVDLVFAKLTALMNAL 122 Xanthomonas campestris pv. campestris
EFX60653   79 ------lTCLSHAQYHELSQSVSIIGKMLGGMK 105 common water flea

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