2GSC


Conserved Protein Domain Family
23S_rRNA_IVP_like

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cd16377: 23S_rRNA_IVP_like 
Click on image for an interactive view with Cn3D
23S rRNA-intervening sequence protein and similar proteins
A family of functionally uncharacterized bacterial proteins, some of which are encoded by an atypically large intervening sequence present within some 23S rRNA genes. The distantly related bAvd protein, which also forms a homopentamer of four-helix bundles, has been suggested to interact with nucleic acids and a reverse transcriptase.
Statistics
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PSSM-Id: 319869
Aligned: 364 rows
Threshold Bit Score: 89.7569
Created: 28-Jan-2016
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
pentamer
Conserved site includes 28 residues -Click on image for an interactive view with Cn3D
Feature 1:pentamer interface [polypeptide binding site]
Evidence:
  • Structure:2GSC: conserved hypothetical cytosolic protein Xcc0516 from Xanthomonas campestris forms homopentamer, contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              ## ##  #   #        #    # #   #   #   #  ##            ## ##  ## ### ##  
2GSC_A        15 DAWRDSMELVEMIYRLTEVFPdq-erYGLTAQLRRAAVSIPSNIAEGAARrs--tPDYSRFLSIARGSLSELDTQVQIAA 91  Xanthomonas cam...
AIT62690      18 VVFQKAYKLSLKLHKLTLSMPke-eqYGLASQIRQASKSICANIAEGFGKqsvstAEFKRFILIAMGSADEMRVWLRYCF 96  Coxiella burnet...
EKO16724      11 EVYRKAYFISLEIHKKTLEFPke-eqYGLASQLRNSSKSICGNIAEGFGKqsqskREFRRFLSMAIGSADETKVWLDYAK 89  Leptospira kirs...
WP_015191513   7 LVYAKAYQFAIRIVNAYKHLTeekkeFVLSKQLLKSGTSIGANIAEANGAis--kAEFKAKMSIAYKETLETKYWISLLK 84  Stanieria cyano...
AAA75526      11 DVFNRAYALSLKIDKISLEMPkf-eqLDLANQLRRSSKSICSNFAEGFAKqnfskREFKKYLIIAIGSANESALWLRYSK 89  Leptospira weil...
WP_009959987  24 ELYRQAFLFQQAVFKVTQSFPke-erYSLTDQVRRSSRAVGANIAEAWSKrr-yeAHFLSKLTDADGELQETLHWLRTAY 101 Verrucomicrobiu...
KPL19644      21 KVYQMAYRLAMDIFKISKSFPke-emYSLTNQVRRSSRSVCSNNAEAYRKrr-dpKHLSLRISDADSEASETLVWLDFAK 98  candidate divis...
KJS04379       9 VVYKRSFKLAMDIFWLTKKFPke-etYSLTSQINRSSRSITSNVSEGWAKrk-feLVFKQHLIHALGSASETETWLEFAL 86  Flavobacteriale...
EDX72268      26 IIYQKAFDAAMTIFEISKQFPie-erYSLSDQIRRSSRAVCANLAEQARKrr-ykASFLAKLNDCEAESAETQVWLKFAV 103 Coleofasciculus...
GAP44105      15 EVYRLAHKLAMDVFWISAGFPve-erYSLTDQIRRSSRSVAANIAEGWGKrk-ypLSFKKQLVDANGSLEETKSWIMFAR 92  Bacteroidales b...
Feature 1                        ##  #          
2GSC_A        92 rlgySRSEDDQSVRRQVDLVFAKLTALMNAL 122 Xanthomonas campestris pv. campestris
AIT62690      97 dlgyLNEKTWVYFRNNYQDIAKMLKGLHKSW 127 Coxiella burnetii str. Namibia
EKO16724      90 dlgyITESLYATWKRTYVDIAKMLSGLYKSW 120 Leptospira kirschneri str. H1
WP_015191513  85 dtgyISEKAFESLYLDADEIGKMLFTIIQNT 115 Stanieria cyanosphaera
AAA75526      90 dlgyITEDQYSEWSDECLQIAKILSKLAQIQ 120 Leptospira weilii serovar Sarmin
WP_009959987 102 sckyLSKETCETLVNQASELGRILGSMITNH 132 Verrucomicrobium spinosum
KPL19644      99 dcgyISLRTYKSLSAKYEEVGRMLGGIAKHA 129 candidate division Zixibacteria bacterium SM23_81
KJS04379      87 eckyIDEPTYKKHTDELEQIGKMLNKLYQNW 117 Flavobacteriales bacterium BRH_c54
EDX72268     104 kcqyISTEQGREIYHIYNQVLRGLVNMINHP 134 Coleofasciculus chthonoplastes PCC 7420
GAP44105      93 dckyISIEQFDSLFPDYETLGGKLWRLEERW 123 Bacteroidales bacterium TBC1

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