3HLU


Conserved Protein Domain Family
YitT_C_like

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cd16379: YitT_C_like 
Click on image for an interactive view with Cn3D
C-terminal domain of Bacillus subtilis YitT and similar protein domains
This domain, found in various bacterial proteins, has no known function. It has been given the designation DUF2179 and occurs at the C-terminus of the Bacillus subtilis membrane protein YitT as well as in single-domain proteins.
Statistics
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PSSM-Id: 319863
View PSSM: cd16379
Aligned: 543 rows
Threshold Bit Score: 44.3536
Threshold Setting Gi: 919107964
Created: 29-Mar-2013
Updated: 18-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
Conserved Features/SitesClick to see Conserved Features Help
 
dimer interface
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Structure:3HLU: DUF2179 protein from Eubacterium ventriosum forms homodimer, contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Feature 1            #                          ###    # #               #  ##     #### #        
3HLU_A         8 QTXVYIVSa-kRKIIADRXLQELdLGVTXLQAVGayknNETEVIXCVXrKATLVKVRNLLKEVdpdAFXIVStANEVFGE 86
gi 917081330 108 FVSLQIFPrraKTGEAINRLRAEgFGVTSVVGTGr--sGPRTILYVIVkRKDLIKVQNVLDQIdpkIFYNISdARSIRGG 185
gi 500208614  94 HLSMQVYPspgNTTELCNRFREQgFGVTTVSGCGr--nGERTILFVLLkRSNLKLATQILDEIqpgIFFNISdARAVRGG 171
gi 169638888 114 FVCLQVFPpvtQVDELTALFRKEgFGVTLVTGEGr--dGYRKILFLFMkRKNLPRALKVLNGHdpkCFFSVSdARSMRGG 191
gi 490193750  96 YVAIQIFPsqdYCQDLLDRLRKSdFGFTSLSGQGr--sGPREVFIVTVkRKDLPRILQILDETapdTFFNISdVRSIRGG 173
gi 516757062  94 YATIQVFPqkeCVQQIITALRNQgFGVTSVLGEGr--dGERVILFVTLkRKDMPEAIKLLEKIepcIFYSVVdTRQIHGG 171
gi 780805668  73 FLSVHIIPpreMVEEFTRLMRDEgFGITAVQGCGr--dGERTMLFVMIkRKDLNKALNLINCHcpnAFFNVSdARRIHGG 150
gi 503588407  94 YLSLQVFPapqLASQFIERLRQEgFGVTSVECQGq--cGVRTVLFVLLkRRDLQRALSILNKLdpnTFFNVSdARLIHGG 171
gi 780810013  94 FLSLQIFPkadKVKEIIEGLRTQgFGVTSVHGEGr--dGDRIILFVNLkRKDLDRALDLLECIqsgAFYHISdTRGIRGG 171
gi 973078997  94 FMSLQIFPpaeLVAEITGALRKQgFGVTQVLGEGr--hGPRTILFVTLkRKDLGKVLRYLDNLgteVFYSVAdARAIHGG 171

                 ..
Feature 1          
3HLU_A        87 GF 88
gi 917081330 186 VF 187
gi 500208614 172 VF 173
gi 169638888 192 II 193
gi 490193750 174 IF 175
gi 516757062 172 VF 173
gi 780805668 151 VF 152
gi 503588407 172 IF 173
gi 780810013 172 VF 173
gi 973078997 172 TF 173

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