4NHF,2BHM,2CC3,4AKY,4JF8,4KZ1,4LSO,4MEI,4O3V


Conserved Protein Domain Family
VirB8

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cd16424: VirB8 
Click on image for an interactive view with Cn3D
periplasmic domain of VirB8 protein
This family contains the periplasmic domain of VirB8 protein which is an essential assembly factor of type IV secretion system (T4SS) channel proteins that are highly diverse in function relative to other bacterial secretion systems. T4SS proteins are important virulence factors for many Gram-negative pathogens, such as Agrobacterium, Brucella, Legionella, and Helicobacter. VirB8 is a bacterial virulence protein with cytoplasmic, transmembrane, and periplasmic regions. It is thought that VirB8 is a primary constituent of a DNA transporter. It is a crucial structural and functional component of the T4SS, with interactions between VirB8 and many other T4SS proteins, including VirB10, VirB9, VirB1, VirB4, and VirB11, as well as with itself.
Statistics
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PSSM-Id: 319761
Aligned: 271 rows
Threshold Bit Score: 56.1458
Created: 29-Dec-2015
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
dimer interfacedimerization
Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1      #  ## ### ##        #  #  #                                      #             
4NHF_A     39 SYGEVVDRYWLNQYVLNRENYDydTIQLNYDTTALlsaASVQQEYYKIYDGENArd---kvLSNKARITVKVRSIQLng- 114 Bartonella grahami...
2CC3_A      5 TQEEAVVNASLWEYVRLRESYDadTAQYAYDLVSNfsaPMVRQNYQQFFNYPNPtsp-qviLGKHGRLEVEHIASNDvt- 82  Agrobacterium tume...
Q7X3L1     81 SSEDALIQGALYDFVGACNTFDpkRKQQLSDACHLfitPDIAREYEQLINPENPdnp-yltLDAKDWIEAQAYGMNKvg- 158 Pseudomonas putida
Q847E0     81 DKEQAVIEGVLFDFIRACNTFDprRKQQLSDTCHTymtRNVAVEYEKEISPDNArnp-yasLGENDWIEAQPKRMNKig- 158 Pseudomonas putida
Q8PRJ2     84 TGQESFVQSQVYDFIMYCNTFDpdWRQHFADLCRLhstQTVAGQYDAETSPDNPnnp-yyqLGQGGRRYPKITGITSlg- 161 Xanthomonas citri
EIF32211   89 SSKDAVIESELARYVTERYTLDraFRQDHIDYVRLhsaSDVADRFNHEMDAKNKd------NPYYAIAETTVRRVKDqri 162 Burkholderia sp. C...
AIL13743   75 KAQILLMETLSRQYVSLRETIDlqTEDVRWKQLSLmtaSQLNEEFMSLMKPENPdspfkkrQESHVTREVQILSSTSlap 154 Candidatus Caediba...
AIY44193   83 TGLESFVESDINTFITACNTFDpnWRQRNADLCRLhstVSVAKQYDHETAADNPdnp-yykLQPGARRYPVITAINPlgd 161 Collimonas arenae
KIA80772   86 VAEEAMVQSNLHAFVRDCNTFDpaWRQHLSDLCRLrstPAVAEQYDREIAPDNPqnp-yyqLPSGGKRRAQITGFSKle- 163 Chromobacterium pi...
AJW93616   95 LSKDAIIDGEIARYLTERFSLNraFRDDMVRYVDLhstPDVAAAFDHEMDVNNRdn---pyYKLPQGVSRKVKDVRVrvf 171 Burkholderia gladioli
Feature 1                                                    #  ##      ##           
4NHF_A    115 ------lgQATVRFTTQQldssgattgPKQHQIATIGYTYvga-pmkSSDRLl----NPLGFQITSYRSDP 174 Bartonella grahamii as4aup
2CC3_A     83 ------pgVQQIRYKRTLivdg--kmpMASTWTATVRYEKvts--lpGRLRLt----NPGGLVVTSYQTSE 139 Agrobacterium tumefaciens
Q7X3L1    159 -------dVYQVSFRSYLhkwg-tkdpVVTNYVANVKIDNtlk-praLGDRWv----NPLGTLATVYRKSE 216 Pseudomonas putida
Q847E0    159 -------dEYQVIFISTNhkwg-dkepRVTSYLATIKVAHtmi-praLGDRWe----NPFGTLATLYRKSE 216 Pseudomonas putida
Q8PRJ2    162 ------kdAYQVSFQSITekag--sppKTDYYTALVRYTFtfk-plaLGDRWe----NALGYATTAYRKDQ 219 Xanthomonas citri
EIF32211  163 rildrddhKAEATFTTYNdgn---ddnKTVYWHVLFRYDFvkq-altPQNRYi----NGTGFMVTGFEPNT 225 Burkholderia sp. Ch1-1
AIL13743  155 s----apnIFQVEWISRDrhkg--qviGQGHWISTLTVSLephevsiEDQYI-----NPIGFTVTHYTLAQ 214 Candidatus Caedibacter acan...
AIY44193  162 -----krdAYQVEFKSVTkdkd--gveTSEYYTAMIRNIYtfk-plaLGDRWe----NPLGFASTSYSKSQ 220 Collimonas arenae
KIA80772  164 ------dnAYQVMFKSLTerpg--aepLVDYFTALVRFNFt-----aQPMALgdvweNPLGFVVTAYRRDQ 221 Chromobacterium piscinae
AJW93616  172 drdakkgeATLVTVEDGSga-----dnKPIYWHVRFQYDVvkq-alsPADRYi----NSTGFVMTAYQPNT 232 Burkholderia gladioli

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