3UB1


Conserved Protein Domain Family
TcpC_C

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cd16428: TcpC_C 
Click on image for an interactive view with Cn3D
C-terminal domain of conjugative transposon protein TcpC
This family contains the C-terminal domain of conjugation protein TcpC and similar proteins. TcpC is required for efficient conjugative transfer, localizing to the cell membrane independently of other conjugation proteins, where membrane localization is important for its function, oligomerization and interaction with the conjugation proteins TcpA, TcpH, and TcpG. C-terminal domain is critical for interactions with these other conjugation proteins. TcpC has low level sequence identity to proteins encoded by the conjugative transposon Tn916, which is responsible for a large proportion of the tetracycline resistance in different pathogens.
Statistics
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PSSM-Id: 319759
Aligned: 179 rows
Threshold Bit Score: 47.9918
Created: 15-Mar-2016
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
trimer
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:trimer interface [polypeptide binding site]
Evidence:
  • Comment:Each protein molecule contains a C-terminal domain and a Center domain, separated by a linker; the 3 together make a non-covalent trimer related by a molecular threefold axis, generating a triangular-based pyramid in which the Central domains form the core of the pyramid and the C-terminal domains the apexes
  • Structure:3UB1: Clostridium perfringens conjugation protein TcpC homotrimer; contacts at 4.0A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                           #                   ###    ##                                
3UB1_A       149 NDADKTKKITDSVSQFFKAYyeqNQTQIDYFLVdg-aDIKGAGQ--KFSFNKI------DRINIYKLSd-----kEFLAI 214 Clostridium per...
WP_052745970 220 NDTDVRDELQENLEGFFEAYa-eTPDHLSRYVEpgahVTELPQGt-LSFHEVRdv---tVPVGSGNGDdv----rEATAT 290 Nocardiopsaceae...
ETK31124     187 RDSATEAELRPQLEGFFKAYaagNQVDLQRYVAng-vTVDGFNGe-FTLAELKd-----VVVPPGDADs-----rEVTAV 254 Microbispora sp...
WP_055508307 218 TDDAAAAELKPQLEGFFKDYasgDAAGLQRYVAag-kSLPSFGGs-FTFAELK------EVVVPVGGAt-----rEIQAV 284 Nonomuraea sp. ...
WP_040269710 210 TDAAARDELLPRLERFFGAYa-eDPDYLSDFVEpg-aRVDRLPPdtLEFVELV------DVAVPASGSgdn-dgrQVTAE 280 Streptomonospor...
WP_017592356 207 VDTEARAELESMLPAFFEAYs-aNPDHLSQYVEsg-vRIAPLPAdsLVFEKLDevavpaRTAAAGDEDv-----rQAVAE 279 Nocardiopsis po...
WP_012894848 222 SDEAAETELRTPLADFFKAYaasDNASLQRYAAag-vTLEGFGGa-FTFVELK------NLDVPLVGGat----rEVTAT 289 Streptosporangi...
KUP96399     210 TDPQARSELEETIKNFFEAYa-qNHEHLDRYLApg-aDVTALPSgvLQFGSIV------DLKVPVAGSgtaedarAAQVT 281 Thermobifida ce...
WP_017619864 206 NDSGTRDELEPRLKRFFEAYaetPEHLPSYLADg--aHVAQLPAgsLKFAGLEe-----LVVPAKTANgnd-dvrQATAT 277 Nocardiopsis gilva
WP_017624066 207 ADSQAREELEPVLTSFFEAYa-eTPEHLTRYVEng-aSVARLPQgsLEFGQLDdv---vVPARTEVGEdd---vrQATAT 278 Nocardiopsis ch...
Feature 1                                # #######               
3UB1_A       215 VDLNVDs-----------------FGNAIKQGFNLTVVQegdkFLVKT 245 Clostridium perfringens
WP_052745970 291 VVWRLAdag-------------deTPADLRQTYQLTVVKdggnWYVRD 325 Nocardiopsaceae bacterium CA15-2
ETK31124     255 VVWAVSsgdvaavatpsadpvsqpAGLEQAYQLTMEKQGg--kWFVRD 300 Microbispora sp. ATCC PTA-5024
WP_055508307 285 VEWLVPtasasaap---nttdpgaVGGRLEQAYRLTVEKqgdkWYVAD 329 Nonomuraea sp. NBRC 110462
WP_040269710 281 VVWVPAeag-------------edTSAELTQSYELTVVKdgenWYVRE 315 Streptomonospora alba
WP_017592356 280 VVWRVPggsg----------gsdgEGATLTQSYQLTVVEsggkWYVRD 317 Nocardiopsis potens
WP_012894848 290 VVWGVPsgasptad--ptpsdpgdMSGKLEQAYLLTVVKqgdkWFVKD 335 Streptosporangium roseum
KUP96399     282 VVWLLPded-------------geDAAELTQSYSVTVVKdgsdWYVRD 316 Thermobifida cellulosilytica TB100
WP_017619864 278 VKWRLAgek-------------gdDPAELTQSYRLSVIKdgddWKVLD 312 Nocardiopsis gilva
WP_017624066 279 VEWRIPgg--------------ggEAAALTQSYRITVVRsdgeWYVRD 312 Nocardiopsis chromatogenes

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