1JM7,7JZV


Conserved Protein Domain Family
RING-HC_BRCA1

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cd16498: RING-HC_BRCA1 
Click on image for an interactive view with Cn3D
RING finger, HC subclass, found in breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
BRCA1, also known as RING finger protein 53 (RNF53), is a RING finger protein encoded by the tumor suppressor gene BRCA1 that regulates all DNA double-strand break (DSB) repair pathways. BRCA1 is frequently mutated in patients with hereditary breast and ovarian cancer (HBOC). Its mutation is also associated with an increased risk of pancreatic, stomach, laryngeal, fallopian tube, and prostate cancer. It plays an important role in the DNA damage response signaling and has been implicated in various cellular processes such as cell cycle regulation, transcriptional regulation, chromatin remodeling, DNA DSBs, and apoptosis. BRCA1 contains an N-terminal C3HC4-type RING-HC finger, and two BRCT (BRCA1 C-terminus domain) repeats at the C-terminus.
Statistics
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PSSM-Id: 438161
Aligned: 16 rows
Threshold Bit Score: 131.264
Created: 3-May-2013
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding siteheterodimer
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Structure:1JM7; Homo sapiens BRCA1 binds two Zn2+ ions through its RING-HC finger.
    View structure with Cn3D
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                           #  #           # #  #  #                 #  #                 
1JM7_A          6 LRVEEVQNVINAMQKiLECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKgp----sQCPLCKndITKRSLQESTRFSQ 81   human
ABL86143        4 VRLKKITDSIGLMQKnLECSICLDLLQDPVSTKCDHQFCNFCVLALLQSSSkp---saRCPLCKivITKRSLTKNEQLDG 80   purple urchin
XP_007908385    6 TEVERVHEVLSLMLKnLECPICLDLMKDPVSTKCDHQFCRFCILKLFHKKNns----aQCPLCNnsFTKRSLRDSTRFKQ 81   elephant shark
XP_006821068    7 NEITLVQDALFRMRKnLECPICLDLLKDPVTTRCSHQFCRFCITEFFKGTSs-----aPCPLCKksITKRSLTESCKINE 81   Saccoglossus ...
AAR89523        4 PTATDVKKRISLLWEtLQCPICLDLMSEPVSTKCDHQFCRFCMLKLLSNTKqn---kaNCPVCKskITKRSLQESPGFQR 80   spotted green...
ELU10687        6 ERTVKIEDTIAMLQKtFECPICLDLMKNAVSTKCDHKFCRLCIQKAIGHKSs-----iPCPICKdpTTKRSLQKLTHWNK 80   Capitella sp....
XP_014352863    6 CSIEEVQRVLSMMHKnLECPVCLELLREPISTKCDHRFCRFCISKLLNKKKkg---aaQCPLCKseVTKSNVQESPRFKL 82   coelacanth
EDO49384        4 GVDEVLNCLRQMQKN-LECSICLELLRNPHSTKCNHQYCWDCINQVLEKSSkksknkwFCPLCKtpVTRRSLTPNPKLAN 82   starlet sea a...
XP_012055211    8 SDIDRICEAIHGLQKsLECTICLEFLTEPIKTRCGHSFCKTCVGKVLKMKDa------CCPLCKksLNRRNISKDDDLQT 81   Atta cephalotes
XP_026827500    9 IDIARLSEALNNLQKsLECTICLEFMTEPMKTRCGHSFCRSCIRQVLQKKAa------HCPLCKkhLNRRNISKDDHLAT 82   clonal raider...
Feature 1                           
1JM7_A         82 LVEELLKIICAFQLDTGL 99   human
ABL86143       81 IVKAVRSVITAVEEDSGL 98   purple urchin
XP_007908385   82 LTEGLMKTIRAFELDTGF 99   elephant shark
XP_006821068   82 IVNAVRGVVDAVKEDTGL 99   Saccoglossus kowalevskii
AAR89523       81 LVSGLQEIILAYENDTGT 98   spotted green pufferfish
ELU10687       81 IMDKVRELPSAFEADSGI 98   Capitella sp. I Grassle & Grassle, 1976
XP_014352863   83 LVEGLLKTIQAFEIDTGY 100  coelacanth
EDO49384       83 IVAAVKNLQDAVTCDIET 100  starlet sea anemone
XP_012055211   82 YIEKFKNLVTAIQNDTNI 99   Atta cephalotes
XP_026827500   83 YITKFKQLVIATQMDTHI 100  clonal raider ant

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