1G25,6NMI


Conserved Protein Domain Family
RING-HC_MAT1

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cd16517: RING-HC_MAT1 
Click on image for an interactive view with Cn3D
RING finger, HC subclass, found in RING finger protein MAT1
MAT1, also known as CDK-activating kinase assembly factor MAT1, CDK7/cyclin-H assembly factor, cyclin-G1-interacting protein, menage a trois, RING finger protein 66 (RNF66), p35, or p36, is involved in cell cycle control and in RNA transcription by RNA polymerase II. It associates primarily with the catalytic subunit cyclin-dependent kinase 7 (CDK7) and the regulatory subunit cyclin H to form the CDK-activating kinase (CAK) complex that can further associate with the core-TFIIH to form the transcription factor IIH (TFIIH) basal transcription/DNA repair factor, which activates RNA polymerase II by serine phosphorylation of the repetitive C-terminal domain (CTD) of its large subunit (POLR2A), allowing its escape from the promoter, and elongation of the transcripts. MAT1 contains an N-terminal C3HC4-type RING-HC finger, a central coiled coil domain, and a C-terminal domain rich in hydrophobic residues.
Statistics
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PSSM-Id: 438180
Aligned: 18 rows
Threshold Bit Score: 101.378
Created: 2-May-2013
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Structure:1G25; Homo sapiens TFIIH MAT1 subunit binds two Zn2+ ions through its RING-HC finger.
    View structure with Cn3D
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #                # #  #  #           #  #         
1G25_A         4 QGCPRCKTTkyrnpslklMVNVCGHTLCESCVDLLFVRgaGNCPECGTPLRKSNF 58  Homo sapiens
NP_610605      4 QACPRCKTTkyrnpslklMVNVCGHTLCESCVDLLFLKgsGACPECMVPLRRNNF 58  fruit fly
ELT91136       4 LACPRCKTTkyrnpdlklMVNVCGHSLCENCVDLLFVRgsGSCLECSVPLRRNNF 58  Capitella sp. I Grassle & Grassle, 1976
XP_002735198   4 QYCPHCKTTkyrnpslklLVNICGHSLCENCVDLLFARgsGSCPECNTALRRNNF 58  Saccoglossus kowalevskii
EFX89324       6 QTCPKCKTTkyrnpamilMVNACGHALCESCVELLFAKgsGACPECKCPLRRNNF 60  common water flea
CBY16466       5 RTCPRCKTTsyrnpsmklMINVCGHSLCESCVNLQYARgqAPCYECALNLKKSGF 59  Oikopleura dioica
EDO44111       4 QSCPRCKTTkyrnpklklMVNVCGHKLCDNCVDVLFTRpsAACPECNTPLRRSDF 58  starlet sea anemone
EEC13542       4 LACPRCRTTkyrnpslklMVNVCGHALCENCVELLFVKgsGSCPQCNVPLRRGNF 58  black-legged tick
XP_002108321   7 IYCLGCKTSsyqnpklkfLVNACGHRLCDGCIKAMFVRpsAPCPQCGTILKRSEF 61  Trichoplax adhaerens
XP_013399115   4 QYCPRCRTTkyrnpslklMVNICGHTLCETCVDLLFIRgsGACPECGTALRRNDF 58  Lingula anatina

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