Conserved Protein Domain Family
RING-HC_TRIM65_C-IV

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cd16609: RING-HC_TRIM65_C-IV 
RING finger, HC subclass, found in tripartite motif-containing protein TRIM65 and similar proteins
TRIM65 is an E3 ubiquitin-protein ligase that interacts with the innate immune receptor MDA5, enhancing its ability to stimulate interferon-beta signaling. It functions as a potential oncogenic protein that negatively regulates p53 through ubiquitination, providing insight into the development of novel approaches targeting TRIM65 for non-small cell lung carcinoma (NSCLC) treatment, and also overcoming chemotherapy resistance. Moreover, TRIM65 negatively regulates microRNA-driven suppression of mRNA translation by targeting TNRC6 proteins for ubiquitination and degradation. TRIM65 belongs to the C-IV subclass of the TRIM (tripartite motif) family of proteins that are defined by their N-terminal RBCC (RING, Bbox, and coiled coil) domains, including three consecutive zinc-binding domains, a C3HC4-type RING-HC finger, Bbox1 and Bbox2, and a coiled coil region, as well as a B30.2/SPRY (SplA and ryanodine receptor) domain positioned C-terminal to the RBCC domain.
Statistics
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PSSM-Id: 438271
Aligned: 12 rows
Threshold Bit Score: 92.8198
Created: 20-Apr-2016
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structures of other RING-HC fingers with bound zinc
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #  #           # #  #  #                        #  #           
Q6PJ69         7 EEKLTCAICLGLYqDPVTLPCGHNFCGACIRDWWDrc-------------gkACPECREPFPDGAELR 61  human
NP_001243053   7 EEKLTCAICLGLYqDPVTLPCGHNFCGACIRDWWDrc-------------gkACPECREPFPDGAELR 61  human
XP_015205250   7 EEELTCVICLGLYkEPAVLPCQHSFCLRCIQDYWVnkdn---------kdvyDCPQCRCAFPSPPSLE 65  spotted gar
XP_028668480   7 QEELTCAICLNIYkDPVVIPCQHSFCYECIKEYWIqkpy---------niscDCPQCRMKFETQPSLE 65  reedfish
OWF37657      16 EEDLTCSICLELYnDPVSLPCQHNFCRKCIHSHLHqksdihvhvlgaehgrfPCPNCRDYVELTETDI 83  Yesso scallop
XP_019856206  23 EEELTCEVCLKIYqDPKTLPCHHSFCLKCLEEIPNqsdel-------tlssiKCPLCRSPAEIPLQGA 83  Amphimedon queenslandica
VTJ59393       7 EDKLTCAICLGLYrDPATLPCGHNFCRACIQDCWRrc-------------qkECPECRQPFPDGAELC 61  woodchuck
XP_021491587   7 EEDLTCSICLGRYrDPVSLPCGHSFCTNCIQDSWRrce------------ekTCPQCRQPFPEGPKLG 62  Mongolian gerbil
XP_020366170   7 EDELTCSVCLRMYqDPVTLPCQHSFCLNCIEGVWAqttg---------prkfECPQCHRKFKHKPTLE 65  whale shark
XP_020368812  11 EEELTCPVCLQIYaDPVILNCKHSFCRACIEESWKepes----------gtySCPECRANYRERPALK 68  whale shark
XP_007899231  11 EEELTCAICLGIYtDPVVLECKHSFCRACIEEFWSgaap----------gtySCPECRAETSERPGLE 68  elephant shark
XP_002587885  13 GEELTCSICLELFtRPKVLPCQHTFCQDCLQDHAEvrm------------pfQCPVCRLKYNKQGRVL 68  Florida lancelet

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