Conserved Protein Domain Family
RING-HC_RBR_RNF19

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cd16629: RING-HC_RBR_RNF19 
RING finger, HC subclass, found in the family of RING finger proteins RNF19A, RNF19B and similar proteins
The family includes RING finger protein RNF19A and RNF19B, both of which are transmembrane (TM) domain-containing RBR-type E3 ubiquitin-protein ligases. RNF19A, also known as double ring-finger protein (Dorfin) or p38, localizes to the ubiquitylated inclusions in Parkinson's disease (PD), dementia with Lewy bodies, multiple system atrophy, and amyotrophic lateral sclerosis (ALS). It interacts with Psmc3, a protein component of the 19S regulatory cap of the 26S proteasome, and further participates in the ubiquitin-proteasome system in acrosome biogenesis, spermatid head shaping, and development of the head-tail coupling apparatus and tail. It modulates the ubiquitination and degradation of calcium-sensing receptor (CaR), which may contribute to a general mechanism for CaR quality control during biosynthesis. Moreover, RNF19A can also ubiquitylate mutant superoxide dismutase 1 (SOD1), the causative gene of familial ALS. It may associate with endoplasmic reticulum-associated degradation (ERAD) pathway, which is related to the pathogenesis of neurodegenerative disorders, such as PD or Alzheimer's disease. RNF19B, also known as IBR domain-containing protein 3 or natural killer lytic-associated molecule (NKLAM), plays a role in controlling tumor dissemination and metastasis. It is involved in the cytolytic function of natural killer (NK) cells and cytotoxic T lymphocytes (CTLs). It interacts with ubiquitin conjugates UbcH7 and UbcH8, and ubiquitinates uridine kinase like-1 (URKL-1) protein, targeting it for degradation. Moreover, RNF19B is a novel component of macrophage phagosomes and plays a role in macrophage anti-bacterial activity. It functions as a novel modulator of macrophage inducible nitric oxide synthase (iNOS) expression. Both RNF19A and RNF19B contain an RBR domain followed by three TMs. The RBR domain was previously known as RING-BetweenRING-RING domain or TRIAD [two RING fingers and a DRIL (double RING finger linked)] domain. Based on current understanding of the structural biology of RBR ligases, the nomenclature of RBR has been corrected as RING-BRcat (benign-catalytic)-Rcat (required-for-catalysis) recently. The RBR (RING1-BRcat-Rcat) domain uses an auto-inhibitory mechanism to modulate ubiquitination activity, as well as a hybrid mechanism that combines aspects from both RING and HECT E3 ligase function to facilitate the ubiquitination reaction. This model corresponds to the RING domain, a C3HC4-type RING-HC finger required for RBR-mediated ubiquitination.
Statistics
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PSSM-Id: 438291
Aligned: 8 rows
Threshold Bit Score: 82.8822
Created: 30-Jul-2013
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structures of other RING-HC fingers with bound zinc
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #              # #  #  #                        #  #      
Q9NV58       130 IECPLCLLRHSkdrfpDIMTCHHRSCVDCLRQYLRIEISESRvn-------iSCPECTERFNP 185  human
Q6ZMZ0       117 VECPLCLVRLPperapRLLSCPHRSCRDCLRHYLRLEISESRvp-------iSCPECSERLNP 172  human
EDV19381       2 LTCPICYTPKSpsefpILSCCEHRTCAACLKRYVSLQISESRtn-------iTCPECSEYFYP 57   Trichoplax adhaerens
XP_002169863  56 LMCNVCFSWKCstffpVLLSCEHRNCIDCLRQHLTIAVRECRvl-------vSCPECSEVFHP 111  Hydra vulgaris
KFM79244     118 LECPLCLFELPcvcfpDLRSCSHRACFNCLQQYLKIEITESRvn-------iSCPECTEPIHP 173  Stegodyphus mimosarum
EZA49013     109 MECPLCLAELPveffpTIQSCHHRSCYDCFQQYLKVEISESRvn-------iACPECSEALHP 164  Cerapachys biroi
FAA00205     103 LECPLCLVAQPvknfpLLSTCPHRSCSECWVQYLTIEITESRvn-------lMCPECQERLHP 158  vase tunicate
RPD78929     530 AACTVCFDDVSh---pITLSCGHRWCRDCLTGYMHASVDNKTfplkclgddaKCPQCIPLALA 589  Lentinus tigrinus ALCF2SS1-7

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