5YWR


Conserved Protein Domain Family
mRING-CH-C4HC2H_ZNRF1

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cd16694: mRING-CH-C4HC2H_ZNRF1 
Click on image for an interactive view with Cn3D
Modified RING-CH finger, H2 subclass (C4HC2H-type), found in zinc/RING finger protein 1 (ZNRF1) and similar proteins
ZNRF1, also known as Nerve injury-induced gene 283 protein (nin283), or peripheral nerve injury protein (PNIP), is an E3 ubiquitin-protein ligase that is highly expressed in the nervous system during development and is associated with synaptic vesicle membranes. It is N-myrisotoylated and is also located in the endosome-lysosome compartment in fibroblasts, suggesting it may participate in ubiquitin-mediated protein modification. It contains an N-terminal MAGE domain, and a special C-terminal domain that combines a zinc finger and a modified C4HC2H-type RING-CH finger, rather than the typical C4HC3-type RING-CH finger, which is a variant of the RING-H2 finger. Only the RING finger of the zinc finger-RING finger motif is required for its E3 ubiquitin ligase activity. ZNRF1 regulates Schwann cell differentiation by proteasomal degradation of glutamine synthetase (GS). It also mediates regulation of neuritogenesis via interaction with beta-tubulin type 2 (Tubb2). Moreover, ZNRF1 promotes Wallerian degeneration by degrading AKT to induce glycogen synthase kinase-3beta (GSK3B)-dependent CRMP2 phosphorylation. Furthermore, ZNRF1 and its sister protein ZNRF2 regulate the ubiquitous Na+/K+ pump (Na+/K+ATPase). In addition, ZNRF1 may be associated with leukemogenesis of acute lymphoblastic leukemia (ALL) with paired box domain gene 5 (PAX5) alteration.
Statistics
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PSSM-Id: 438355
Aligned: 9 rows
Threshold Bit Score: 89.7025
Created: 23-Mar-2015
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C HClick to see conserved feature residue pattern help
Evidence:
  • Structure:5YWR; Homo sapiens ZNRF1 binds two Zn2+ ions
    View structure with Cn3D
  • Comment:modified RING-CH finger (C4HC2H-type)
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.
  • Comment:The RING-CH fingers found in ZNRF proteins are modified as C4HC2H-type RING-CH finger, rather than the typical C4HC3-type RING-CH finger, which is a variant of RING-H2 finger.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #  #              # #  #  #          #  #   
5YWR_B        45 ECVICLEELlQGDTIARLPCLCIYHKSCIDSWFEVNRSCPEHPAD 89  human
Q66KG7       151 ECVICLEELsQGDTIARLPCLCIYHKSCIDSWFEVNRCCPEHPSD 195 African clawed frog
XP_002741202 160 ECVICLDDLqQGDTIARLPCLCIYHKSCIDSWFEVNRSCPEHPND 204 Saccoglossus kowalevskii
Q6P4U6       171 ECVICLEELqQGDTIARLPCLCIYHKSCIDSWFEINRSCPEHPSD 215 zebrafish
EOB09034      41 ECVICLEELlQGDTIARLPCLCIYHKSCIDSWFEVNRSCPEHPSD 85  mallard
XP_007905794 109 ECVICLEELlQGDTIARLPCLCIYHKSCIDSWFEVNRSCPEHPSD 153 elephant shark
XP_001198564 193 ECVICLEDMlQGDTIARLPCLCIYHKSCIDSWFERNRSCPEHPND 237 purple urchin
XP_014347541 177 ECVICLEEMqQGDTIARLPCLCIYHKSCIDSWFEVNRSCPEHPSV 221 coelacanth
Q8ND25       183 ECVICLEELlQGDTIARLPCLCIYHKSCIDSWFEVNRSCPEHPAD 227 human

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