Conserved Protein Domain Family
RING-HC_MEX3B

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cd16721: RING-HC_MEX3B 
RING finger, HC subclass, found in RNA-binding protein MEX3B
MEX3B, also known as RING finger and KH domain-containing protein 3 (RKHD3), or RING finger protein 195 (RNF195), is an RNA-binding phosphoprotein that localizes in P-bodies and stress granules, which are two structures involved in the storage and turnover of mRNAs. It regulates the spatial organization of the Rap1 pathway that orchestrates Sertoli cell functions. It has a 3' long conserved untranslated region (3'LCU)-mediated fine-tuning system for mRNA regulation in early vertebrate development such as anteroposterior (AP) patterning and signal transduction. MEX3B contains two K homology (KH) domains that provide RNA-binding capacity, and a C-terminal C3HC4-type RING-HC finger. Like other MEX-3 family proteins, MEX3B shuttles between the nucleus and the cytoplasm via the CRM1-dependent export pathway.
Statistics
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PSSM-Id: 438381
Aligned: 5 rows
Threshold Bit Score: 136.733
Created: 20-Mar-2015
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H C C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structure of Homo sapiens MEX3C with bound Zn2+ ions through its RING-HC finger
  • Comment:C3HC4-type RING-HC finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #  #           # #   #  #           #  #            
Q6ZN04       512 RKGSRDCSVCFESEVIAALVPCGHNLFCMECANRICEKSEPECPVCHTAVTQAIRIFS 569 human
EMP29169     319 RKGSRDCSICFESEVIAALVPCGHNLFCMECANRICEKTEPQCPVCHSAVTQAIRIFS 376 green seaturtle
A1L3F4       450 RKGSRECSICFESEVIAALVPCGHNLFCMECANRICEKNQPQCPVCHAGVTQAIRIFS 507 African clawed frog
XP_005989663 477 RKGSRDCSICFESEVIAALVPCGHNLFCMECANRICEKSEPQCPVCHTAVTQAIRIFS 534 coelacanth
NP_001074462 480 RKGSRDCSVCFESEVIAALVPCGHNLFCMECANRICERNEPKCPVCHAAVTQAIRIFS 537 zebrafish

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