2FQW,2HQB


Conserved Protein Domain Family
PBP1_BmpA_like
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cd06304: PBP1_BmpA_like (this model, PSSM-Id:107299 is obsolete and has been replaced by 380527)
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Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria
Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Links
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Statistics
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PSSM-Id: 107299
Aligned: 193 rows
Threshold Bit Score: 184.25
Created: 24-Aug-2006
Updated: 17-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
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ligand binding
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Feature 1              ##        #                                                               
2FQW_A         6 VVGMVTDSgdiddksFNQQVWEGISRFAqe--nNAKCKYVTas-tdAEYVPSLSAFADe-NMGLVVACgsflveAVIETS 81  Treponema pallidum
NP_436667     31 KMGLLVPGsvs-eegWNRIGFNALKGVEae--lGAEVSYVElqqnpASFEKAFRDFASq-GYNVILGHgfefqdAALEVA 106 Sinorhizobium m...
YP_001114098  41 KVALILPGkid-dvsWNQAMYEGVKALEkeyagKIEVTYTEqvyevSNIEPTLRDFASq-GYDLIIGHgfqfmePIIKVA 118 Desulfotomaculu...
ZP_02087796   89 KVALCLSGaan-dmgWCQSAYDGLKLLEad--yGCEVTYTEnl-tpDDIEAAFADYAAs-GYDVVIGHgyefgdPAVDVA 163 Clostridium bol...
BAB53027      58 SIAILTPEegt-dygWNQQGIDAAKAAGka--aGVEVVVAQgl-gyGDVRPTLRELASd-GASLLIAHasgyntSAPEIA 132 Mesorhizobium l...
ZP_01520298   13 RYAVVLFGpeg-qgsFNESGLRGAHKARe---aGHEVDVLWvagqsDQQRAAEMSALCggRYALILAHggqgdgPVQILA 88  Comamonas testo...
BAB77060      44 KIAIALPGait-dqaWNQSGYEGLNLAKqk--lNAEVAYVEqvaqaDQTEALTDFARK--GYNLVFAHggqfdaAIEQVA 118 Nostoc sp. PCC ...
YP_723208     53 KIAIALPGvit-dggWNQSGYEGVKKAAek--lNAEMIYVEnvvqaDQTETISDFARK--GYNLVIGHggqfdaAIEQIA 127 Trichodesmium e...
YP_001355255  36 KIGILMPGskl-dhgWMESAYNGIKRAEarygsKVKISFIEnv-kfGDMEQVLVSLAS--KNDLVIGAagqtqaSVLKVA 111 Janthinobacteri...
ZP_01054691   27 RAAIVMPGsis-dngWNQAGFEGLTQAGea--lGFETTFSEsvhqpEQIEVLSDYARR--GYDLVIGHggefqdAVERVA 101 Roseobacter sp....

Feature 1                   #                                                 #                  
2FQW_A        82 ARfpKQKFLVIDavvqdrdnvvSAVFGQNEGSFLVGVAAAlkakeagkSAVGFIVGmelgmMPLFEAGFEAGvkavd--p 159 Treponema pallidum
NP_436667    107 PEypDTVFLISSsyife-gnviGLNTDTSQPFYLMGVIAAkt-----gKKAGLVGGmeippIKEAFEGFTNGvrsva--p 178 Sinorhizobium m...
YP_001114098 119 QEypETKFALGTgfktl-pntcVYDVKLEDGGYLMGTLAGlmt---ktNKIGVVGGadvaeIYRGHEAFKHAakqvn--p 192 Desulfotomaculu...
ZP_02087796  164 EQypDTKFIVTEgevsa-dnvaSYVSKCEEGGYIMGMLAAgms---esGKVGFIGPiqgasLVKIMNGFEDGakevn--p 237 Clostridium bol...
BAB53027     133 KElkVPVAIVDTpnglekglvaDYTLSGHQGAYLAGRLAAkms---rsKSVGIVVSgeppsWNSQSAAFAQGvkaenpdv 209 Mesorhizobium l...
ZP_01520298   89 DRwpEQAFAVTQgswta-anvaRYEVLQEQSAFLAGVLASqws---ktGKVGHFSGekvppGLRGRAAYADGlrrag--f 162 Comamonas testo...
BAB77060     119 PQfpNTFFVGVNgntka-eniaSLRIDHLQGSYLCGIIGAsvt---ksNKLAYIAGqeftaTQEELRGFELGaksvn--s 192 Nostoc sp. PCC ...
YP_723208    128 SQfpGTFFLGVNgniag-enyaSVTTNYFQVGYLAGVVAGlmt---etNKVAYLTGlsfkgTNLQGRAFELGaksvn--s 201 Trichodesmium e...
YP_001355255 112 QRfpKVKFSIVGptgtptsnvaQYDVLQAQIGFIAGAVAAmss---knGAVSYVGGaeipaIVNTGKEFGNGaryvk--p 186 Janthinobacteri...
ZP_01054691  102 SRfpETMFMVNNglgtk-envaNADFYFSQIAYLMGYIAGsmt---qsDTIGIIAAqkfkfTTDTVAGYEAGakaan--p 175 Roseobacter sp....

Feature 1                   #                                                     #              
2FQW_A       160 diqVVVEVANTFsDPQKGQALAAKLYDSGV-NVIFQvaggtGNGVIKEARDRrln-gqdVWVIGVDRDQYMDGvydgsks 237 Treponema pallidum
NP_436667    179 dfpVSEVYIGNFtDATATKEASLSLISQGA-DFVLPnasgaTVGGFQAAAESga----dVKTFSIFSDYTSVAp-----k 248 Sinorhizobium m...
YP_001114098 193 diqIQELYTGDWrDAAKAKEGAISMYDAGA-DVIWHsgdgiGLGVVDAGKEKn------KTVLGNVADQNVLAp-----n 260 Desulfotomaculu...
ZP_02087796  238 diqVQTAWTGSFtDTALGKEAAQAMIDNGA-DVIGHcanesGTGAINAAKEAk------VYATGDSYDQNDLAp-----d 305 Clostridium bol...
BAB53027     210 kitYAVIGPAAYsDAAGGKRVTESVIASGA-DIIFGqgngsSFGMLQAVETTkaadggkVYFIDVIGDKSPIDk-----g 283 Mesorhizobium l...
ZP_01520298  163 egqLVTQFCGHQhRPGWARSCVSAMVEQTGlDIVFAmldggRPGVTQACRAQg------VAQIGNVLDWVARDp-----e 231 Comamonas testo...
BAB77060     193 niqIVSTFTGDWsDVAKAKEATLALISSGV-DVIYQwfdsaAPAVLQAASDKg------VYAFGNTKDQLDIAp-----k 260 Nostoc sp. PCC ...
YP_723208    202 iveVVISYTGDFnDIAKGKEAALALISTGV-DVIYHlldnaAPAVLQTAQEQg------IYAVGNTTDQLDIAp-----k 269 Trichodesmium e...
YP_001355255 187 dikYFETYTGDFdDVTKAKEATLAAIGQGA-DVHYNilnlgVRGMEQAARDKn------TRMIGSYTNYCADKn-----p 254 Janthinobacteri...
ZP_01054691  176 dvsVLVTWTGDWdDIAKGKEAALNQISQGA-DVVWPtmdsaTLGAMQAVQEKg------VYGIGIYRDAINEWp------ 242 Roseobacter sp....

Feature 1               #                                     
2FQW_A       238 VVLTSMVKRADVAAERISKMAYdgsf--pggQSIMFGLeDKAVGI 280 Treponema pallidum
NP_436667    249 NILGLYVADYARGVIRIVGDIRngkk--pttNVEFGLKdADVMKF 291 Sinorhizobium meliloti 1021
YP_001114098 261 NVLSGIAYNWTPVVKEMVDDILnnnftnrdkKFYWLTAaNGGVTV 305 Desulfotomaculum reducens MI-1
ZP_02087796  306 TILSSSVYHIPHVIEVAFKTVAdgt---fegGIYQLGMaDGAVSV 347 Clostridium bolteae ATCC BAA-613
BAB53027     284 FLLSSVVWNIEPVYAAMIADLKadt---fgtKHYTIGLkDDSVKL 325 Mesorhizobium loti MAFF303099
ZP_01520298  232 VFVASAICDSGEALFRAVEDHArgll-plggYRAFGLEePSLVRL 275 Comamonas testosteroni KF-1
BAB77060     261 AVLTSAVKRLDIAIAYLAEIAQqkq---lkgQIYTIGLeREDILF 302 Nostoc sp. PCC 7120
YP_723208    270 AVLTSAVQNVGEAIAYIANLAKnnq---lkgEKYILGIeNPEITK 311 Trichodesmium erythraeum IMS101
YP_001355255 255 LYLAYTVSGIGFMLEYAIDQMVagt---wkpEYKPFGLaMGPQSA 296 Janthinobacterium sp. Marseille
ZP_01054691  243 EILQSAILDVRGNMRSYLERAAase---ldgELYRATMsNELAMR 284 Roseobacter sp. MED193

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