2DIQ,2G3R,2IG0,1MHN,2EQK,2O4X,2HQX,2E6N,2O4X,2D9T,1G5V,2GF7,2GF7,2QQS,2DIG,2EQU,1XNI,1SSF


Conserved Protein Domain Family
TUDOR

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cd04508: TUDOR (this model, PSSM-Id:119391 is obsolete and has been replaced by 410449)
Click on image for an interactive view with Cn3D
Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Statistics
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PSSM-Id: 119391
Aligned: 348 rows
Threshold Bit Score: 31.7996
Created: 12-Dec-2003
Updated: 17-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
 
dimethylated
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:dimethylated arginine/lysine binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                #    # #                      #  #             
2DIQ_A         36 GDIVAAPLptngSWYRARVLGTle----nGNLDLYFVDfGDNGd--CPLkDLRA 83   human
2IG0_A          8 GLRVVAKWssngYFYSGKITRDvg----aGKYKLLFDD-GYECd--VLGkDILL 54   human
NP_001071846  124 NALIDAQDtdvgAWFEAKVVNVtkgktdgLDYHIKFDDyGDDGvkvVGEkLIRP 177  Ciona intestinalis
NP_178361     106 GTKVQAVFsddgEWYDATIEAHt-----aNGYFVAYDEwGNKEe--VDPdNVRP 152  thale cress
EAT86128      117 GDLIEAQWtd-rSWYKAKIQSVlgs-asaPKYVVRFIDyDDSTt--VDRdAIRP 166  Phaeosphaeria nodorum SN15
XP_001763154  115 GTKVQAIWsedgEWYKATVEAVt-----pGGYFVLYDEwGNKEe--VDAsNVRE 161  Physcomitrella patens subsp. patens
XP_797685    1191 GEICGALLvregVWCRGKIQCMlp----dNNAVVLFTDyGNEEv--VSIaNIRA 1238 purple urchin
CAK86910      167 GQQCEAIYssdgRYYLGTIEKVt-----eEGYHIRFKKnSNREi--VPLiYLRE 213  Paramecium tetraurelia
EAR89665      179 GFACEAIYpddgKYYPCIIEKIte----dGRYVIKFKKyNNKEe--LSIyLLRE 226  Tetrahymena thermophila SB210
XP_001351306  161 NNQFQALYkkdgQWYDCIISKYk-----gDSFLITYIGyNNSEy--VSTdQVRI 207  Plasmodium falciparum 3D7

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