1ADQ,1F58,2FBJ,2IG2,1RHH,1IGA


Conserved Protein Domain Family
IgC_CH1

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cd04985: IgC_CH1 (this model, PSSM-Id:143186 is obsolete and has been replaced by 409374)
Click on image for an interactive view with Cn3D
CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin
IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Statistics
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PSSM-Id: 143186
Aligned: 31 rows
Threshold Bit Score: 95.4362
Created: 26-Oct-2007
Updated: 17-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
 
heterodimerIgV domain
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:
  • Comment:Dimerization of Ig domains from different chains is common, but not found in all members.
  • Structure:1ADQ; human IGM Fab, heavy and light chain -IGc interface, based on 3.5A distance
    View structure with Cn3D
  • Citation:PMID 9145108

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         ## #                  #                         # ##        ## #            
1ADQ_H    128 APTLFPLVScensn-psstVAVGCLAQDFLPdSITFSWKyknns-disstRGFPSVLr-gGKYAATSQVLLpskdvmqgt 204 human
P01875      7 PPRLFPLVLcsps---dsvYTVGCAAFDFQPsSIAFTWFdsnns-svsgmDVIPKVIs-gPPYRAVSRIQMnqseg--ke 79  chicken
A34891    141 SPTVFPLVScgat---sgyVTMGCIGKGYLPdSLTFSWSkdstd--ltdyLQYPSVLs-gGKYDRVSHARVtegdf--ks 212 ladyfish
AAV28075    4 APTLFPLAQcgsg--tgdmMTLGCIATGFTPaSLTFKWNeqggn-sltdfVQYPAVQt-gGSYTGVSQLRVkrad---wd 76  brown trout
AAY42141  145 SPTLFPLVQcnsg--padkITVGCLARDFYPkSLTFQWTnssgt--altsENYPPAEk-nNKYTGVSLVQVsksdw--ds 217 Chinese perch
AAC59687   10 APTLFPLVPcgsga-svdpVSVGCLATGFSPdSLTFGWSegske--ltnfQKYPSVLgsgGLYSMTSQLSIpkadw-enk 85  bowfin
AAL99934  145 KPTVFPLIQcgsg--tgdtVTLGCLATGFAPsALTYGWSkdgaalpltdfIQYPPVQk-nNLYQGVSQIQVsrqdw--da 219 black rockcod
AAB03838   53 APSLFPLYPscgtdtsqdpIALGCLAKDFLPeTIEFNWSdnknpnitdgvKKFPSVLntvGTYSATTQLLVpask----a 128 Trachemys scripta ...
AAH81242  124 SPSLFPLIScges---mdpVTIGCLAKDFLPeTISFTWGdknnasystglKSYKPVMqssGTYSASSQVNVasavw--dn 198 African clawed frog
A46532      5 APSVYPLIScgas---ldpVVIGCLAKGFLPdSVTFDWTdknnasfsagvAKLPSVTt-gGLYSASTRVKVpsesw--kn 78  axolotl
Feature 1                             
1ADQ_H    205 neHVVCKVQHpn----gnKEKDVP 224 human
P01875     80 kqPFRCRAAHp------rGNVEVS 97  chicken
A34891    213 kaEFKCTTELgg----kkTPVVIP 232 ladyfish
AAV28075   77 skIFECAVEHs------aGSKTVP 94  brown trout
AAY42141  218 rkSFKCSVHHngsthdlqVHKPIP 241 Chinese perch
AAC59687   86 dkMFYCKATNpsg--tasAELKPP 107 bowfin
AAL99934  220 kkKFECTVTHeag--taqGDFEKP 241 black rockcod
AAB03838  129 qtIFYCLAEHp------nGNKKIE 146 Trachemys scripta elegans
AAH81242  199 ieQFYCNAKHldt--iksVELKKD 220 African clawed frog
A46532     79 rdPYYCKVTHps----lgQPLTKK 98  axolotl

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