2VA4


Conserved Protein Domain Family
Ig_NCAM-1_like

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cd05732: Ig_NCAM-1_like (this model, PSSM-Id:143209 is obsolete and has been replaced by 409395)
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Immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins
Ig_NCAM-1 like: domain similar to the fourth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE).
Statistics
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PSSM-Id: 143209
Aligned: 7 rows
Threshold Bit Score: 173.096
Created: 17-Aug-2007
Updated: 18-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2VA4_A      94 VQPHIIQLKNETTYEn-gQVTLVCDAEGEPIPEITWKRAvdgFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRY 172  human
P13590     306 AKPKITYVENKTAMEledQITLTCEASGDPIPSITWKTSt--RNISNEEKTLDGRIVVRSHARVSSLTLKEIQYTDAGEY 383  chicken
EAW67201   306 AKPKITYVENQTAMEleeQVTLTCEASGDPIPSITWRTSt--RNISSEEKTLDGHMVVRSHARVSSLTLKSIQYTDAGEY 383  human
CAM60097   298 VQPHITKLRNVTAVEg-sAAMISCKAEGEPLPEISWRRAsdgHSFSDGDKSPDGRVEVRGRYGESMLTIVVVKLSDWGRF 376  zebrafish
XP_425540  315 VQPQIIQLKNETTFEn-gKATLICEAEGEPIPEITWKRAtdgITFSEGDKSPDGRIEVKGQHGKSSLHIKDVKLSDSGRY 393  chicken
127855     301 AKPKITYVENKTAVEl-dEITLTCEASGDPIPSITWRTAv--RNISSEATTLDGHIVVKEHIRMSALTLKDIQYTDAGEY 377  African clawed frog
NP_571277  300 VQPKITFLENQTASEleeQITLTCEATGDPTPNIIWSFGr--RVFTENEQSLDGNVVVRSDARVSSLTLKYVQFTDAGQY 377  zebrafish
2VA4_A     173 DCEAASRIGGHQKSMYLDI 191  human
P13590     384 VCTASNTIGQDSQAMYLEV 402  chicken
EAW67201   384 ICTASNTIGQDSQSMYLEV 402  human
CAM60097   377 DCEALSRIGGHQKSMFLDI 395  zebrafish
XP_425540  394 DCEAASRIGGHQKSMYLDI 412  chicken
127855     378 FCIASNPIGVDMQAMYFEV 396  African clawed frog
NP_571277  378 LCTARNSIGQDIQSMYLEV 396  zebrafish
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