1OW0


Conserved Protein Domain Family
IgC_CH4

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cd05768: IgC_CH4 (this model, PSSM-Id:143245 is obsolete and has been replaced by 409425)
Click on image for an interactive view with Cn3D
CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin
IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Statistics
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PSSM-Id: 143245
Aligned: 10 rows
Threshold Bit Score: 182.185
Created: 10-Sep-2007
Updated: 17-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:receptor binding site
Evidence:
  • Structure:1OW0_A, human IgA-Fc bound with its receptor FcaRI, contacts based on 3.5 A distance.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                          #                                          
1OW0_A    107 PEVHLLPPPSEELAlnelVTLTCLARGFSPKDVLVRWLqgsqelprekYLTWASRqepsq---gtttFAVTSILRVAAED 183 human
AAH72981  469 PDVYLLPPSAQELIqqemVTLTCFVTGFNPKEIFIQWMqggvsisedkFINTVPMksdg-----eqtYFIYSKLAIPAAK 543 African clawed frog
P04220    267 PDVYLLPPAREQLNlresATITCLVTGFSPADVFVQWMqrgqplspekYVTSAPMpepq----apgrYFAHSILTVSEEE 342 human
P01875    322 PSVYVFPPPTEQLNgnqrLSVTCMAQGFNPPHLFVRWMrngeplpqsqSVTSAPMaenp----enesYVAYSVLGVGAEE 397 chicken
AAH89670  472 PSVYVFPPPQEELSlgetATLTCLVKGFSPSDIFVKWVhkneevsknhYTNTNINeelss--ngrktFFLYSLFTIDSRN 549 western clawed frog
AAO52809  453 PKIVLLPPTSEDLSnsetVTLTCLVKGFSPADLFLKWHhngapvpdaeYSDTNKLqdag-----nesFSMYSKLEIRVED 527 marbled lungfish
A46507    464 PSVYVFPPPAEELSlqetATLTCMASSFLPSSILLTWTqqnqpispqnYLIFGPEkdg-------dfYSLYSKLKVSVED 536 chicken
AAH71034  464 PSVYVFPPPLEELSkretATLTCLVKGFSPSEIFVKWLhkneavpkqnYINTSINdellpkgqksgkFFLYSLHTIDIKD 543 African clawed frog
ABG72685  325 PAVYVLPPPSEQLAlqetATLTCLLKGFYPEEFFVKWLrndepvgdseFFTSRPVqesk----tperYFTSSTINVNEQD 400 Eublepharis macula...
A46532    327 PSVYIYPPPSEELAlketATIVCLMRGYHPCDLFVRWLensqqlqkqdYVNTKQAeevdpt-tgqksCFMYSMLKIPAAQ 405 axolotl
Feature 1              #     ## ## #    
1OW0_A    184 WKKGDTFSCMVGHEALPLAFTQKTID 209 human
AAH72981  544 WNQGDVFTCVVGHEALPLYITQQSID 569 African clawed frog
P04220    343 WNTGETYTCVVAHEALPNRVTERTVD 368 human
P01875    398 WGAGNVYTCLVGHEALPLQLAQKSVD 423 chicken
AAH89670  550 WKDGDSFSCVVGHESLPLQLTQRSID 575 western clawed frog
AAO52809  528 WNNGHSFTCIVGHESLDLNVSSKTID 553 marbled lungfish
A46507    537 WQRGDVFGCVVGHDGIPLNFIHKSID 562 chicken
AAH71034  544 WDAGDSFSCVVGHESLPLQLTQRSID 569 African clawed frog
ABG72685  401 WNSGDHYTCVVGHEALPLQTTQKTVD 426 Eublepharis macularius
A46532    406 WTAGNTYTCVVGHEALPLQITQKSID 431 axolotl

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