1L6Z,2GK2


Conserved Protein Domain Family
Ig_CEACAM_D1

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cd05774: Ig_CEACAM_D1 (this model, PSSM-Id:143251 is obsolete and has been replaced by 409430)
Click on image for an interactive view with Cn3D
First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)
IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D1 Ig-like domain.
Statistics
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PSSM-Id: 143251
Aligned: 27 rows
Threshold Bit Score: 123.929
Created: 24-Oct-2007
Updated: 17-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
 
antigen binding
Conserved site include 1 residue -Click on image for an interactive view with Cn3D
Feature 1:antigen binding site
Evidence:
  • Structure:1L6Z_A, Mus musculus sCEACAM1a bound with mouse hepatatitis virus (MHV), defined by crystallographic and mutational analysis.
    View structure with Cn3D
  • Comment:The CC' loop in the N-terminal Ig-like domain [D1] of sCEACAM1a, gnttaid, is involved in binding of MHV and other ligands.
  • Comment:An Ile residue of sCEACAM1a [D1] is a key virus binding residue on the CC' loop, however this residue and others in the loop are not highly conserved in this group.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                          #                                             
1L6Z_A         2 VTIEAVPPQVAeDNNVLLLVHNLPlaLGAFAWYKGnttaidkeIARFVPn--sNMNFTGQaysGREIIYSNGSLLFQMIT 79  house mouse
Q63111       276 LTVESAPTSVAeGASVLLLVHNLPenLRAIFWYKGvilfkdleVARYVIg--tNSSVLGPahsGRETMYSNGSLLLQNVT 353 Norway rat
BAE20744      36 ITIESVPPIAVeGDNVLLFVQNLPenVQTLSWYKGgkllkmfeIARHVIa--tNSSVMGPahsGRETMLNNGSLMIKNVT 113 house mouse
XP_001074635 243 LSIEALPPSLPeGGNALLRVDNQAekPQVFFWYKGkrafeefkIAHYETa--sQTLKWGPkysGRERIYTNGSLLLQNVT 320 Norway rat
XP_001519024  78 LTVTPIPPNPLeGWDVTLSVSGAPggLLLYNWYRGaslsltqmILSYINa--tEIQTPGAahsGREAVHPNGSLLIQRVT 155 platypus
EAW57290     308 TMIVPVPTKPTeGQDVTLTVQGYPkdLLVYAWYRGpasepnrlLSQLPSg---TWIAGPAh-tGREVGFPNCSLLVQKLN 383 human
AAI25407      30 LTSKEMRFSAAeGAKVLLSVPDQEenLLSFSWYKGkdvnenftIAHYKKs--sDSLQLGKkvsGREEIYKDGSMMLRAIT 107 house mouse
EAW57290      11 ISITLEPAQPSeGDNVTLVVHGLSgeLLAYSWYAGptlsvsylVASYIVs--tGDETPGPahtGREAVRPDGSLDIQGIL 88  human
NP_036057     35 LTIELVPPMVAeGGNSVLFVHEMPlnVQAFYWYKQrdstksyeVARYLTp--tNQSSKMPqhsDRKTVFYSGSLLIRNVT 112 house mouse
XP_001519017 497 LRIVPVPQHPRvGEDITLSIWGLPglPKTYTWYRGaagk-phlILRYNTgvgvSNWLLGPahsGREAGTKNGSLLLRDVS 575 platypus
Feature 1                                     
1L6Z_A        80 MKDMGVYTLDMTden--yrrTQATVRFHV 106 house mouse
Q63111       354 RNDAGFYTLRTLstd--lkaKVVHVQLQV 380 Norway rat
BAE20744     114 RKDSGYYTLQILdttsrreiMRAEFFVQR 142 house mouse
XP_001074635 321 QEDTGIYTLESFdty--yrcEVAHVHFQV 347 Norway rat
XP_001519024 156 LNDSGSYLLQSInpq--fqtEIAFGFLRV 182 platypus
EAW57290     384 LTDTGRYTLKTVt------vQGKTETLEV 406 human
AAI25407     108 LEDTGFYTLQTFkah--gqqEVTHVHLQV 134 house mouse
EAW57290      89 PRHSGTYILQTFnrq--lqtEVGYGHVQV 115 human
NP_036057    113 KADSGVYTLLTFnte--mesELTHVHLEV 139 house mouse
XP_001519017 576 PQDSGRYIVHVVtlq---gkEEASITIDV 601 platypus

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