1XZ0,1A1M,1ZAG,1JE6,1N5A


Conserved Protein Domain Family
IgC_MHC_I_alpha3

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cd07698: IgC_MHC_I_alpha3 (this model, PSSM-Id:143322 is obsolete and has been replaced by 409495)
Click on image for an interactive view with Cn3D
Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Statistics
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PSSM-Id: 143322
Aligned: 26 rows
Threshold Bit Score: 109.685
Created: 17-Oct-2008
Updated: 18-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
 
heterodimerMHC binding
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:
  • Structure:1A1M_A; human MHC class I alpha3 domain forms dimer with beta2 microglobulin, defined using 3.5 A contacts
    View structure with Cn3D
  • Citation:PMID 8624812
  • Structure:1N5A_A; muring MHC class I alpha3 domain forms dimer with beta2 microglobulin, defined using 3.5 A contacts.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                         # #                           ## ###     # #                
1XZ0_A    185 VKPEAWLSHgpspgpghLQLVCHVSGFYPKPVWVMWMrge--qeqQGTQRGDILPSADGTWYLRATLEVaag---eaaDL 259 human
1A1M_A    183 DPPKTHVTHhpvs-dheATLRCWALGFYPAEITLTWQrdge-dqtQDTELVETRPAGDRTFQKWAAVVVpsg---eeqRY 257 human
1N5A_A    183 DSPKAHVTHhprs-kgeVTLRCWALGFYPADITLTWQlnge-eltQDMELVETRPAGDGTFQKWASVVVplg---keqNY 257 house mouse
AAA48518  148 EPPKIKVTSradh-dnmETLICRADGFYPKDIHPVWIrdge-vweQETMRGLMAPNVDGTFHTWIGIKIdpk---drgRF 222 Ameiva ameiva
P15979    202 ERPEVRVWGkea--dgiLTLSCRAHGFYPRPIVVSWLkdga-vrgQDAHSGGIVPNGDGTYHTWVTIDAqpg---dgdKY 275 chicken
NP_001522 202 EPPLVRVNRketf-pgvTALFCKAHGFYPPEIYMTWMknge-eivQEIDYGDILPSGDGTYQAWASIELdpq---ssnLY 276 human
CAB63861  209 VPPAVTVTCsqal-egtDNLTCQAISFSPQNISVAWYqdekavspDTQQSGGVLPDGNGTYRTWVTLRVpqg---eeqRF 284 pig
CAD58766  197 VSPQVSLLQks----ssSPVVCHATGFYPSGIKISWQkngq-dhdEDVELEELLPNEDGTFQKSSTLTVtpee-wknnKF 270 zebrafish
AAD08650  205 VPPTASVFQeee---ssPEVVCHATGFFPKTVMITWQkdge-dvhEDVELRETLPNQDGTFQKRSILTVsaed-lqkhTY 279 channel catfish
CAA90792  184 DLPSVSLLQks----psSPITCHATGFYPDKAEMFWRksge-elhEHVEKGEIVPNNDGSFQMDVKLAHpsiesedwtNY 258 guppy
Feature 1                         
1XZ0_A    260 SCRVKHSsle-gqDIVLYWV 278 human
1A1M_A    258 TCHVQHEgl--pkPLTLRWE 275 human
1N5A_A    258 TCRVYHEgl--pePLTLRWE 275 house mouse
AAA48518  223 QCRVDHAglekpvDLAVEEP 242 Ameiva ameiva
P15979    276 QCRVEHAsl--pqPGLYSWE 293 chicken
NP_001522 277 SCHVEHCgv--hmVLQVPQE 294 human
CAB63861  285 SCHVEHGgn--hsVHAVPCA 302 pig
CAD58766  271 RCVVEHQgktkteKEIRTNE 290 zebrafish
AAD08650  280 TCVIQHSsl--ekEMVLPVS 297 channel catfish
CAA90792  259 ECVFQLYgk---kDIITKLE 275 guppy

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