1B2W,1F58,1LIL,1RHH,2ADG,1QLR,1IQD,1NFD,1AQK


Conserved Protein Domain Family
IgC_L

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cd07699: IgC_L (this model, PSSM-Id:143323 is obsolete and has been replaced by 409496)
Click on image for an interactive view with Cn3D
Immunoglobulin Constant domain
IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Statistics
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PSSM-Id: 143323
Aligned: 17 rows
Threshold Bit Score: 101.74
Created: 7-Jun-2009
Updated: 17-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
 
heterodimerintrachain IgV
Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:
  • Structure:1RHH_A; human light chain IgC domain forms a heterodimer with the CH1 domain of the heavy chain, defined using 4.0 A contacts.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            ###             # # # ##                     ####             ###           
1B2W_L       112 APSVFIFPPsdeql-ksgtASVVCLLNNFYprEAKVQWKvdnalqsgNSQESVTEQds---kdSTYSLSSTLTLskadye 187 human
1LIL_A       112 APSVTLFPPsseel-qankATLVCLISDFYpgAVTVAWKadsspvkaGVETTTPSKqs----nNKYAASSYLSLtpeqwk 186 human
1RHH_A       113 APSVFIFPPsdeql-ksgtASVVCLLNNFYprEAKVQWKvdnalqsgNSQESVTEQds---rdSTYSLGSTLTLskadye 188 Homo sapiens
1NFD_E       113 SPKVTVFPPspeel-rtnkATLVCLVNDFYpgSATVTWKangatindGVKTTKPSKq-----gQNYMTSSYLSLtadqwk 186 house mouse
1AQK_L       116 APSVTLFPPsseel-qankATLVCLISDFYpgAVTVAWKadsspvnaGVETTKPSKqs----nNKYAASSYLSLtpeqwk 190 human
125147         6 RPTVSIYCPsleqr-nsgsASTVCLVDKFYpgGAQVTWKgdnkvissGVDTSDKIKdk----dNTYSMSSTLTMssee-f 79  bullfrog
NP_001087883 141 EPALLVFPPytddneskdsSTLTCHISKLEvsLVNVNWLidgttvqdGVTTSNPVRes----dNTFSMSSYLTLsskdin 216 African clawed ...
125143         5 APSVLLFPPskeel-ttgtATIVCVANKFYpsDITVTWKvdgttqqsGIENSKTPQsp---edNTYSLSSTLSLtsaqyn 80  Oryctolagus cun...
AAG31698     135 PPVLTILRPssreelssskVTLLCLINHMSvaFADVRWLvngnsvteGVFTGSAEQqp----dHKFKSSSSLTIqrsewd 210 zebrafish
125945         5 APTITLFPPskeelneatkATLVCLINDFYpsPVTVDWVi------dGSTRSGETTapqrqsnSQYMASSYLSLsasdws 78  chicken
Feature 1                                ##   
1B2W_L       188 khkVYACEVTHqgl-----sspVTKSFNR 211 human
1LIL_A       187 shrSYSCQVTHeg-------stVEKTVAP 208 human
1RHH_A       189 khkVYACEVTHqgl-----sspVTKSFNR 212 Homo sapiens
1NFD_E       187 shnRVSCQVTHege-----tveKSLSPAE 210 house mouse
1AQK_L       191 shkSYSCQVTHeg-------stVEKTVAP 212 human
125147        80 kysTMTCEVTHptltpalaksfQTSECTF 108 bullfrog
NP_001087883 217 kdrLYSCMIKQegs-----safISKGVKL 240 African clawed frog
125143        81 shsVYTCEVVQgsa------spIVQSFNR 103 Oryctolagus cuniculus
AAG31698     211 kdrELTCEATVas-------ktSRASIRK 232 zebrafish
125945        79 sheTYTCRVTHng-------tsITKTLKR 100 chicken

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