1V6G


Conserved Protein Domain Family
LIM2_abLIM

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cd09328: LIM2_abLIM 
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The second LIM domain on actin binding LIM (abLIM) proteins.
The second LIM domain of actin binding LIM (abLIM) proteins: Three homologous members of the abLIM protein family have been identified; abLIM-1, abLIM-2 and abLIM-3. The N-terminal of abLIM consists of four tandem repeats of LIM domains and the C-terminal of acting binding LIM protein is a villin headpiece domain, which has strong actin binding activity. The abLIM-1, which is expressed in retina, brain, and muscle tissue, has been indicated to function as a tumor suppressor. AbLIM-2 and -3, mainly expressed in muscle and neuronal tissue, bind to F-actin strongly. They may serve as a scaffold for signaling modules of the actin cytoskeleton and thereby modulate transcription. It has shown that LIM domains of abLIMs interact with STARS (striated muscle activator of Rho signaling), which directly binds actin and stimulates serum-response factor (SRF)-dependent transcription. All LIM domains are 50-60 amino acids in size and share two characteristic highly conserved zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.
Statistics
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PSSM-Id: 188714
Aligned: 17 rows
Threshold Bit Score: 92.4088
Created: 23-Apr-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:1V6G_A: Human abLIM LIM2 domain binds Zn
    View structure with Cn3D
  • Comment:The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #  #                #  #  #  #                  #  # 
1V6G_A         15 GTRCFSCDQFIEGEVVsALGKTYHPDCFVCAVCRLPFPpgdRVTFNGKECMCQKCS 70   human
XP_002603774  337 GTKCHGCGDYVEGEVVtALGKTYHQKCFVCSRCRQPFPpgdRVTFNGRDCLCKFCI 392  Florida lancelet
NP_001163574   97 GTKCANCQQYVEGEVVsTMGKTYHQKCFTCSKCKQPFKsgsKVTNTGKEVLCEQCV 152  fruit fly
XP_002571548   82 GVRCETCQGYVEGEVVtVLGKTFHTHCFRCTTCRRLFNsgeRTTIVDGSYYCMSCS 137  Schistosoma mansoni
XP_001949191  216 GKKCTVCNDYIKDELViVLERTYHQQCFTCSHCRQPCPkgdLVTYVGNSILCSKCK 271  pea aphid
NP_001152835   89 GTRCNGCGEFVEGEVVtALGKTYHPNCFACTVCKRPFPpgdRVTFNGRDCLCQLCA 144  chicken
Q8K4G5        155 GTRCHGCGEFVEGEVVtALGKTYHPNCFACTICKRPFPpgdRVTFNGRDCLCQLCA 210  house mouse
NP_001107788  106 GTRCNICGEFVEGEVVtALGKTYHPTCFVCTICKRPFPagdRVTFNGKDCLCQYCA 161  zebrafish
XP_696875     203 GTRCFSCEEFIEGEVVsALGKTYHPRCFVCATCKQPFPagdRVTFNGKECICEKCT 258  zebrafish
EFA10334      106 GTKCATCHDYVEGEVVtALGKTYHKKCFTCDRCRQPPPd-eKVTYTGKEILCQKCV 160  red flour beetle

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