2CUP


Conserved Protein Domain Family
LIM1_FHL1

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cd09344: LIM1_FHL1 
Click on image for an interactive view with Cn3D
The first LIM domain of Four and a half LIM domains protein 1
The first LIM domain of Four and a half LIM domains protein 1 (FHL1): FHL1 is heavily expressed in skeletal and cardiac muscles. It plays important roles in muscle growth, differentiation, and sarcomere assembly by acting as a modulator of transcription factors. Defects in FHL1 gene are responsible for a number of Muscular dystrophy-like muscle disorders. It has been detected that FHL1 binds to Myosin-binding protein C, regulating myosin filament formation and sarcomere assembly. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.
Statistics
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PSSM-Id: 188730
Aligned: 8 rows
Threshold Bit Score: 84.8063
Created: 4-Oct-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:2CUP_A: Human Skeletal Muscle Lim-Protein LIM1 domain binds Zn
    View structure with Cn3D
  • Comment: The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                  #  #  #  #                  #  # 
2CUP_A         8 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDn-KILCNKCT 61   human
NP_001087359  40 CAECRKPIGVDSKELHYKNRYWHDTCFRCAKCYHPLANEQFIAKDn-KILCSKCT 93   African clawed frog
NP_001007288  56 CAECRKPIGADAKELNHKNRHWHEGCFRCAKCYKPLANEPFQAKDdgKIMCGKCG 110  zebrafish
BAD66671      40 CAECRRPIGVDAKELHHKNRYWHEGCFRCARCAKSLVSEPFCTVDn-KIMCEKCG 93   Japanese eel
XP_002191091  56 CIECKKPIGADSKELHFKNRYWHDSCFRCFKCYTSLVNEPFMLREnnKVWCSNCT 110  zebra finch
BAB24273      39 CQECHKPIGADSKEVCYKEQFWHNTCFKCSKCSQLLATETFVAWDk-NILCNKCA 92   house mouse
AAI59223      40 CTECRRTISTDSKELHHKGKYWHSDCFRCAKCYKNLAKESFTSKDd-RILCGTCS 93   zebrafish
CAG11730      40 CAECHRPIPVGSKELHHKGRYWHEECFRCAKCYKNLAKEPFSTKDe-RIMCGKCC 93   spotted green pufferfish

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