1KKD


Conserved Protein Domain Family
CaMBD

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smart01053: CaMBD 
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Calmodulin binding domain
Small-conductance Ca2+-activated K+ channels (SK channels) are independent of voltage and gated solely by intracellular Ca2+. These membrane channels are heteromeric complexes that comprise pore-forming alpha-subunits and the Ca2+-binding protein calmodulin (CaM). CaM binds to the SK channel through this the CaM-binding domain (CaMBD), which is located in an intracellular region of the alpha-subunit immediately carboxy-terminal to the pore. Channel opening is triggered when Ca2+ binds the EF hands in the N-lobe of CaM. The structure of this domain complexed with CaM is known. This domain forms an elongated dimer with a CaM molecule bound at each end; each CaM wraps around three alpha-helices, two from one CaMBD subunit and one from the other.
Statistics
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PSSM-Id: 198121
Aligned: 13 rows
Threshold Bit Score: 104.033
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1KKD_A        20 DTQLTKRVKNAAANVLRETWLI----YKNTKLVKKIDHAKVRKHQRKFLQAIHQ---LRSVKMEQRKLNDQANTLVDLAK 92  Norway rat
XP_001603381 455 DTQLTKRLKNAAANVLRETWLI----YKHTRLVKRVNPGRVRTHQRKFLLAIYA---LRKVKMDQRKLMDNANTITDMAK 527 jewel wasp
NP_115773    382 DTQLTKRVKNAAANVLRETWLI----YKHTRLVKKPDQGRVRKHQRKFLQAIHQaqkLRSVKIEQGKVNDQANTLAELAK 457 house mouse
CAG00620     314 DTQLYKKIKNTAANVLRETWLI----YKNTKLVKKVDRAKIRHHQRKFLQSIHQ---LRALKMEQRKLTDQANTVADLAK 386 spotted green p...
NP_001041075 380 DSKLTNQRKNAAASVLQETWFI----HKYKKALHKGDDLRLRHHQRRFLHSINE---FRRIKWDQRKLQEKGNSLLDVGK 452 nematode
CAF94198     627 DIQISKRVRHAAANVLRECWLL----HRTN--VKKGNGGEHRRHQRCLLEAIRV---FRHLRLKQRKLRDYVSEMVDLPK 697 spotted green p...
CCC42162     534 DTQLTKQLKHSAANVLRETWFI----FKFRKLVEKPDFGKIRKHQRKFLLAIYE---MRRVRRDQRKLAENLVSLGDVAK 606 nematode
AAK81862     304 DIQYTKEMKESAARVLQEAWMF----YKHT---RRKESHAARRHQRKLLAAINA---FRQVRLKHRKLREQVNSMVDISK 373 human
NP_508917    367 DSKLAREHKEAAARVLQHTWHI----HKCLQGSDGGNR-RLRTYQRKFLKAIHK---FRSVKSEMREFSEN-NSQNNPQM 437 nematode
CAB03986     363 ENNITNEHKNAAACVLQNTWRTvlraRDYQKSSSRRNQQRLAKMQRMLLCSVIT---FRKTRWKLRMQMEDEDDFFtarr 439 nematode
XP_003123894 700 DTQLTKRVKNAAANVLRETWLI----YKNTKLVKKIDHAKVRKHQRkFLQAIHQ---LRSVKMEQRKLNDQANTLVDLAK 772 pig
DAA25921     414 DTQLTKRVKNAAANVLRETWLI----YKNTKLVKKIDHAKVRKHQRKFLQAIHQlrsvkmeqrklndqantlvdlaktqn 489 cattle
NP_001072484 374 DTQLSKRVKNAAANVLRETWLI----YKHTKLVRKIDHAKVRKHQRKFLQAIHL---LRSVKMEQRKLNDQANTLVDLAK 446 western clawed ...
1KKD_A        93 TQL 95  Norway rat
XP_001603381 528 TQN 530 jewel wasp
NP_115773    458 AQS 460 house mouse
CAG00620     387 TQN 389 spotted green pufferfish
NP_001041075 453 LHS 455 nematode
CAF94198     698 MQM 700 spotted green pufferfish
CCC42162     607 TSS 609 nematode
AAK81862     374 MHM 376 human
NP_508917    438 TRL 440 nematode
CAB03986     440 afn 442 nematode
XP_003123894 773 tqn 775 pig
DAA25921     490 imy 492 cattle
NP_001072484 447 TQN 449 western clawed frog
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