Conserved Protein Domain Family
EphR_LBD_B6

?
cd10475: EphR_LBD_B6 
Ligand Binding Domain of Ephrin type-B Receptor 6
Ephrin receptors (EphRs) comprise the largest subfamily of receptor tyrosine kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. EphB6, a kinase-defective member of this family, is downregulated in MDA-MB-231-breast cancer cells and myeloid cancers and upregulated in neuroblasoma and glioblastoma. EphRs contain a ligand binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyrosine kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling).
Statistics
?
PSSM-Id: 198443
Aligned: 4 rows
Threshold Bit Score: 317.64
Created: 9-Jun-2011
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
ephrin binding
Feature 1:ephrin binding site [polypeptide binding site]
Evidence:

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                     #           #### ##    # #  #                                    # #
NP_001101327   33 EEVLLDTTgetsEIGWLTYPpggWDEVSVLDdqrRLTRTFEACHvaglppgsGQDNWLQTHFVERRGAQRAHIRLHFSVR 112  Norway rat
XP_001364555   32 EEVLLDTTgetsEIGWLTYPpggWDEVSVLDnqqRLTRTFEACHvaeg-lglGQDNWLQTHFVDRQGAHRAHIRLHFSVR 110  gray short-ta...
NP_001004387   31 EEILLDTTgetsEIGWTSHPpdgWEEVSVRDdkeRQIRTFQVCNmd----epGQNNWLRTHFIERRGAHRVHVRLHFSVR 106  chicken
XP_002944684   41 LFALSLTHl--vPQIWALSH---WDEVSVLDgqrRLLRTYEVCNpya--qqpNQSNWLRTGYIESRGARRVYVKLRFSVR 113  western clawe...
Feature 1                                                                #                   ###  
NP_001101327  113 ACSSLgvs----ggTCRETFTLYYRQAdepdspdsisaWHLKRWTKVDTIAADESFpasssssswavgphrtdqrVGLQL 188  Norway rat
XP_001364555  111 ACTSLgvg----ggMCRETFTLYYRQAeepddpshasaWHLGPWIKVDTIAADESFpasass-------sswsggAGLQL 179  gray short-ta...
NP_001004387  107 DCASMrtv----asTCKETFTLYYHQSdvdiasqelpeWHEGPWTKVDTIAADESFsqvd------------rtgKVVRM 170  chicken
XP_002944684  114 DCATLkpppkrnhlVCRETFTFYYRQAggpte-adkweWAEEKWVKVDTIGPGKSFtrdl-----------gkgaQGPHM 181  western clawe...
Feature 1                                 ### #        
NP_001101327  189 NVKERSFGPLtqRGFYVAFQDTGACLALVAVKLFSYT 225  Norway rat
XP_001364555  180 NVKERSFGPLtqRGFYVAFQDTGACLALVVVKIFAYS 216  gray short-tailed opossum
NP_001004387  171 NVKVRSFGPLtkHGFYLAFQDSGACMSLVAVQVFFYK 207  chicken
XP_002944684  182 DERILDFGPInrKGFYLAFVDSGACLSLAGVKVYFYK 218  western clawed frog

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap