Conserved Protein Domain Family
Sema_3C

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cd11251: Sema_3C 
The Sema domain, a protein interacting module, of semaphorin 3C (Sema3C)
Sema3C is a secreted semaphorin expressed in and adjacent to cardiac neural crest cells, and causes impaired migration of neural crest cells to the developing cardiac outflow tract, resulting in the interruption of the aortic arch and persistent truncus arteriosus. It has been proposed that Sema3C acts as a guidance molecule, regulating migration of neural crest cells that express semaphorin receptors such as plexin A2. Sema3C may also participate in tumor progression. The cleavage of Sema3C induced by ADAMTS1 promotes the migration of breast cancer cells. Sema3C is a member of the class 3 semaphorin family of secreted proteins. Semaphorins are regulatory molecules in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer. The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module.
Statistics
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PSSM-Id: 200512
Aligned: 5 rows
Threshold Bit Score: 970.13
Created: 7-Apr-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:homodimer interface [polypeptide binding site]
Evidence:
  • Comment:based on the homodimer structure of Semaphorin 3A
  • Comment:Semaphorin/plexin signaling is dependent on the formation of a 2:2 heterotetramer that is composed of two plexin molecules bound to a semaphorin homodimer. Monomeric semaphorin binds plexin but does not trigger signaling.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
O42236        45 HRISHSPLDYRILLMDEDQDRIYVGSKDHILSLNINNISqDPLSIFWPASANKVEECKMAGKDpthGCGNFVRVIQSYNR 124 chicken
NP_001088402  43 YSISQNPLDYRILFMDEDQDRIYVGSKDHILSLNINNIShDPLSVFWPASTSKVEECKMAGKDpthGCGNFVRVIQNFNR 122 African clawed ...
Q99985        45 FSLSHHPLDYRILLMDEDQDRIYVGSKDHILSLNINNISqEALSVFWPASTIKVEECKMAGKDpthGCGNFVRVIQTFNR 124 human
XP_692847    101 YSLSEKAMDYRILFTDEDQDRMYVGCKDHILSMDINNISqATLKIFWPASISKVEECQMAGKDpthGCGNFLRVIQPYNR 180 zebrafish
CAG02410      49 SSVSERPMDYRILHVDEDQERMFVGCRDHVLSLDINNVTqGAQKLFWPASAAKIQECQMAGKDpthGCGNFVRVVQPYNR 128 spotted green p...
Feature 1                                                                                        
O42236       125 THLYVCGSGAFSPVCVYVNRGRRSEEQIFKIdskcESGKGRCSFNPNVNTVSVMINEELFSGMYIDFMGTDAAIFRSLTK 204 chicken
NP_001088402 123 THLYVCGSGAFSPVCTYINRGRRSEDRIFAIdyknESGKGRCSFNPKVNTVSVMINEELFSGMYIDFMGTDSAIFRSLTK 202 African clawed ...
Q99985       125 THLYVCGSGAFSPVCTYLNRGRRSEDQVFMIdskcESGKGRCSFNPNVNTVSVMINEELFSGMYIDFMGTDAAIFRSLTK 204 human
XP_692847    181 THLFICGSGAYSPVCAYVNRGRRPEEQVFQIssraESGKGRCSFNPQVNTVSVMLNQELFSGMYIDFMGTDAAIFRSLTT 260 zebrafish
CAG02410     129 THLFVCGSGAYSPVCVYVNRGRRPEERVFHVdskaESGKGRCSFNPGVNTVAVMLNQELFSGVYIDFMGTDAAVFRSLTR 208 spotted green p...
Feature 1                                                     ## #  ###                          
O42236       205 RNaVRTDQHNSKWLSEPIFVDAHVIPDGTDPNDAKIYFFFKERLTDNSGSTKQIHSMIARICPNDTGGQRSLVNKWTTFL 284 chicken
NP_001088402 203 RNaVRTDQHNSKWLSEPIFVDAQLLPDGTDPNDAKVYFFLKERLTDNSGSTKQIHSMIARVCPNDIGGQRSLVNKWTTFL 282 African clawed ...
Q99985       205 RNaVRTDQHNSKWLSEPMFVDAHVIPDGTDPNDAKVYFFFKEKLTDNNRSTKQIHSMIARICPNDTGGLRSLVNKWTTFL 284 human
XP_692847    261 RNpVRTDQHNSKWLSEPLFIDAQLIPDGSDPNDAKLYFFLRERLTDTSGNTKNIHAMVARVCPNDTGGQRSLVNKWTTFL 340 zebrafish
CAG02410     209 RNaVRTDQHNSKWLSEPAFVAAHLIPDGSHPNDSKLYFFLRERLADSGGATQSVRTTVARVCPNDVGGQRSLVNRWTTFL 288 spotted green p...
Feature 1               #  ## # #   #                      ########                         #### 
O42236       285 KARLVCSVMDEDGTETYFDELEDVFLLeTDNPRTTLVYGIFTTSSSIFKGSAVCVYHLSDIQTVFNGPFAHKEGPNHQLI 364 chicken
NP_001088402 283 KARLVCSVMDDDGTETYFDELEDVFLMeTDNPRTTLVYGIFTTSSSVFKGSAVCVYHMSDIQTVFNGPFAHKEGPNHQLI 362 African clawed ...
Q99985       285 KARLVCSVTDEDGPETHFDELEDVFLLeTDNPRTTLVYGIFTTSSSVFKGSAVCVYHLSDIQTVFNGPFAHKEGPNHQLI 364 human
XP_692847    341 KARMVCSVLEEDGTETHFDELENVFLLeTDHPKGLLIFGVFTSTSSVFRGSAVCVYNMADILTVFNGPFAHREGPNFQWV 420 zebrafish
CAG02410     289 KARLVCSVPEADGTETHFDQLESVFLLeSERPEAPLLFGVFASTSSVFTGSAVCVYKMADVLTVFNGPFAHREGPGFRWG 368 spotted green p...
Feature 1                                                   #              #                     
O42236       365 PYQGRIPYPRPGTCPGGAFTPNmrtTKEFPDDVVTFIRNHPLMYNPIYPIHKRPLIIRIGTDYKYTKIAVDRVNAADGRC 444 chicken
NP_001088402 363 PYQGKIPYPRPGTCPGGAFTPNmksTKEFPDDVVTFIRNHPLVFNSIYPTLRRPLLIRTGTEYKFTKIVVDRVNAADGKY 442 African clawed ...
Q99985       365 SYQGRIPYPRPGTCPGGAFTPNmrtTKEFPDDVVTFIRNHPLMYNSIYPIHKRPLIVRIGTDYKYTKIAVDRVNAADGRY 444 human
XP_692847    421 AFQGRIPYPRPGTCPGGAFTPHiqsTKEFPDDVVTFVRNHPVMFNPIYPVGRKPLVVRTHADYKYTSIAVDQVPAADGHY 500 zebrafish
CAG02410     369 AFQGRIPYPRPGTCPGGAFTPDlqsTKQLPDEVVAFARNHPLMFNPAYPLGRRPLLVRAGAPYRYTAVAVDQVAAADGSY 448 spotted green p...
Feature 1                                                                              
O42236       445 HVLFLGTDQGTVQKVVVLPTNfsasGELILEELEVFqsnSPITTMKISSKKQQLYVSSeeGVTQVPLHRC 514 chicken
NP_001088402 443 HVLFLGTDKGTIQKVVVVPANgsasGELILEEMEVFkshAPITSMKISSKKQQLYVSSeeGIIQLSLHRC 512 African clawed frog
Q99985       445 HVLFLGTDRGTVQKVVVLPTNnsvsGELILEELEVFknhAPITTMKISSKKQQLYVSSneGVSQVSLHRC 514 human
XP_692847    501 QVLFLGTDKGTVQKVVVLPSNgsldEDLILEELEVFktqSPITNLRISSKKQQLYVSSehGISQVSLHRC 570 zebrafish
CAG02410     449 QVLFLGTDEGRVQKVIVLPGNdslhQDLILEELEVFqnkAPVTNLWISSKKQQLYVSSewGLSQVSLHRC 518 spotted green pufferfish

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