1KSG,1KSH,3DOE


Conserved Protein Domain Family
Arl2

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cd04154: Arl2 
Click on image for an interactive view with Cn3D
Arf-like 2 (Arl2) GTPase
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Statistics
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PSSM-Id: 206720
Aligned: 17 rows
Threshold Bit Score: 284.603
Created: 1-Sep-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
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Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:GTP/Mg2+ binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                           #######                 ##                     #          
1KSG_A      5 LLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGE---DVDTISPTLGFNIKTLEHrgFKLNIWDVGGQKSLRSYWRN 81  house mouse
CAA91070    3 LLTILRQQKLKEREVRVLLLGLDNAGKTTILKCLLNE---DVNEVSPTFGFQIRTLEVegLRFTIWDIGGQKTLRNFWKN 79  fission yeast
AAL73237    3 LLSIIRKNRQKEREMRILFLGLDNAGKTTILKKLNNE---DISGISPTLGFNIKTFVHraYTLNIWDVGGQTTLRPYWRN 79  Coprinopsis cinerea
AAM65870    3 LLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGE---DTSVISPTLGFNIKTIIYqkYTLNIWDVGGQKTIRSYWRN 79  thale cress
EAL17589    3 LLTIVRKNKAKSKEMRVLFLGLDNAGKTTILKKLNNE---NISDISPTLGFNIKTLIRdgYTLNIWDVGGQRTLRPYWRN 79  Cryptococcus neofo...
CAI75345    3 LLKVIRKTKLKDKEIRILILGLDNAGKTTILKSINNE---DITKIEPTVGFNIKSVKYneYILNFWDVGGQESIRLFWRN 79  Theileria annulata
XP_640825   3 LLTVLKKLKQKEKELRILMLGLDNAGKTTILKKFNGE---DISTISPTLGFNIQTLMYkeYKLNIWDIGGQKTLRSYWRN 79  Dictyostelium disc...
XP_756801   3 LLTIIRKTKLRSHEFRFLFLGLDNAGKTTILKKLQNQpqsEIEAISPTLGFAIQTFQYqgFHLNVWDIGGQKSLRPYWKN 82  Ustilago maydis 521
XP_822673   3 LLSIIRKTKRKEREMRILMLGLDNAGKTTCVKKFCGK---DTSSISPTLGFQITAFSLngCTLNIWDVGGQQSLRSYWRN 79  Trypanosoma brucei
CAI39369    3 LLKIIKKTKEREKEMRLLILGLDNAGKTTILKKFNGE---DISQISPTLGFNIKTLSYngYKLNCWDVGGQQTIRSYWKN 79  Paramecium tetraur...
Feature 1                                                  ## #                               
1KSG_A     82 YFESTDGLIWVVDSADRqRMQDCQRELQSLLVEERLAGATLLIFANKQDLPgalscnAIQEALelds----irsHHWRIQ 157 house mouse
CAA91070   80 YFESTEAIIWVVDSLDDlRLEECRNTLQELLVEEKLLFTSILVLANKSDVSgalsseEISKILnisk----yksSHWRIF 155 fission yeast
AAL73237   80 YFEQTDALVWVVDSSDRmRMHDCKRELHSLLTEDRLAGASLLVFANKQDLPgsmddsEISNVSllaldlpsiksHHWTIW 159 Coprinopsis cinerea
AAM65870   80 YFEQTDGLVWVVDSSDLrRLDDCKMELDNLLKEERLAGSSLLILANKQDIQgaltpdEIGKVLnles---mdksRHWKIV 156 thale cress
EAL17589   80 YFESTDAVVWVVDSSDRmRMEDCRDELKELLHEERLAGATLLIFANKQDLGgsmtleEIRDALelrs----iisHRWIVY 155 Cryptococcus neofo...
CAI75345   80 YFENTDALIWVIDSVDTsRLNISKREIMKILKNDNMYKSTVLIFANKQDIKgsltpkEINQMLeldk---vindRSYMIF 156 Theileria annulata
XP_640825  80 YYEENDAVIWVIDSSDIrRIDDCKFELKKLLEEEKFAGASFLVFANKQDLDgamtseEISKYLdleq----lntHHWEIM 155 Dictyostelium disc...
XP_756801  83 YFEKTDAIIWVVDSSDTaRLSDCKEELEKLLQEERLHGATILIFANKQDLPgalsaeQIKSHLeldk----vsnHSWRIQ 158 Ustilago maydis 521
XP_822673  80 YFESTDGLIWVVDSNDVaRLDDCRRELHTLLQEERLAGASLLILLNKQDLSgalppgEIERHLgidii--rkgkRHVYLC 157 Trypanosoma brucei
CAI39369   80 YFEQTDGLIWVVDSTDKaRLDDCKKELQNLLKQEKLIGATLLIFCNKQDVPkslslqQIREYLeldl----iqtRHWGII 155 Paramecium tetraur...
Feature 1       ##                
1KSG_A    158 GCSAVtgEDLLPGIDWLLDD 177 house mouse
CAA91070  156 SVSALtgLNIKDAISWLAND 175 fission yeast
AAL73237  160 PCSAVtgQNLVSGLDWVVND 179 Coprinopsis cinerea
AAM65870  157 GCSAYtgEGLLEGFDWLVQD 176 thale cress
EAL17589  156 PCSAFtgKNLDDGMNWLVKE 175 Cryptococcus neoformans var. neoformans B-3501A
CAI75345  157 GTSAVegNGILTGIEWLIND 176 Theileria annulata
XP_640825 156 SCSAVtgLGLEEGIDWVVKD 175 Dictyostelium discoideum
XP_756801 159 PCSAYtgANLVDGLDWSVKD 178 Ustilago maydis 521
XP_822673 158 ACSAKtgAGLLQGMEWIVQD 177 Trypanosoma brucei
CAI39369  156 ACSAVtgDGLLEGIDWIVTD 175 Paramecium tetraurelia

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