1X43


Conserved Protein Domain Family
SH3_Endophilin_B1

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cd11945: SH3_Endophilin_B1 
Click on image for an interactive view with Cn3D
Src homology 3 domain of Endophilin-B1
Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth factor (NGF) trafficking, neurite outgrowth, mitochondrial outer membrane dynamics, and cell death. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. Endophilin-B1 forms homo- and heterodimers (with endophilin-B2) through its BAR domain. It interacts with amphiphysin 1 and dynamin 1 through its SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212878
Aligned: 4 rows
Threshold Bit Score: 118.59
Created: 13-Dec-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of peptide ligands to the SH3 domains of other superfamily members
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Citation:PMID 7664083
  • Citation:PMID 7735837
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 # #  #   #                   ##            # ##     
1X43_A        15 SNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLN 75  house mouse
Q5ZIR1       306 SGSRKARVLYDYDAANSSELSLLADEVITVYSIPGMDSDWLMGERGNQKGKVPITYLELLN 366 chicken
NP_001085431 299 NGSRKARVLYDYDAANSSELSLLADEVITVYSMPGMDSDWLMGERGHQKGKVPITYLELLN 359 African clawed frog
CAQ15263     300 SGTRKARVLYDYDAASSTELSLLADEVITVSSVPGMDSDWLMGQRGNQKGKVPITYLELLN 360 zebrafish

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