2KS1,2L2T,2KS1,2L9U,2JWA


Conserved Protein Domain Family
TM_EGFR-like

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cd12087: TM_EGFR-like 
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Transmembrane domain of the Epidermal Growth Factor Receptor family of Protein Tyrosine Kinases
PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. They are receptor PTKs (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane (TM) helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. They are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. The TM domain not only serves as a membrane anchor, but also plays an important role in receptor dimerization and optimal activation. Mutations in the TM domain of EGFR family RTKs have been associated with increased breast cancer risk.
Statistics
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PSSM-Id: 213052
Aligned: 15 rows
Threshold Bit Score: 25.9538
Created: 13-Jul-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
dimer interface
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Comment:ErbB receptors are activated via ligand-induced dimerization. All ErbB receptors can form homo- and heterodimers. The TM domain plays an important role in dimerization and optimal activation.
  • Structure:2KS1: Human ErbB2 TM domain forms a heterodimer with ErbB1 TM domain; contacts at 4A.
    View structure with Cn3D
  • Structure:2L2T: Human ErbB4 TM domain forms a homodimer; contacts at 4A.
    View structure with Cn3D
  • Structure:2JWA: Human ErbB2 TM domain forms a homodimer; contacts at 4A.
    View structure with Cn3D
  • Structure:2L9U: Human ErbB3 TM domain forms a homodimer; contacts at 4A.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #  ##  ## ### ##  #                 
2KS1_B          6 NGPKIPSIATGMVGALLLLLVVALGIGLFMRRRHIVRK 43   human
2KS1_A          7 RASPLTSIISAVVGILLVVVLGVVFGILIKRRQQKIRK 44   human
2JWA_A          7 RASPLTSIISAVVGILLVVVLGVVFGILIKRRQQKIRK 44   human
ABG35749      224 PPWSYHSVAAGVVGGILGAVVIGLVAFFFIRRSRINRK 261  African clawed frog
XP_003052118  197 SGPATTSIVGGVVGGCIILLIIAVVVFLYFRRQKKREG 234  Nectria haematococca mpVI 77-13-4
EGR50497      235 SNPKTVSIIGGVIGGCAVLIVLGAIAFLFVRRRSLHRK 272  Trichoderma reesei QM6a
EHK40926      225 SNPKTISIVAGVVGGCAVLAALGIIAFLFIRRRNRYSE 262  Trichoderma atroviride IMI 206040
NP_001089062  645 DNSQVYMAASIVISILIVITISTAIVLSIRRQKQLKKK 682  African clawed frog
NP_956413     640 KTGPGTTVAITVGGVLLFIILLALLVFYLRRQKHQKKK 677  zebrafish
EAU87820      328 RTSKGTIIGASVGGSLGFLLIVGLIIFWFLRRRRRQNA 365  Coprinopsis cinerea okayama7#130

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