1XMI,1R0Z,1R0Z


Conserved Protein Domain Family
ABCC_CFTR1

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cd03291: ABCC_CFTR1 
Click on image for an interactive view with Cn3D
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Statistics
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PSSM-Id: 213258
Aligned: 7 rows
Threshold Bit Score: 537.518
Created: 2-Aug-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site
  • Structure:1R0Z; Mg-ATP bound, 3.5A contacts
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                              ## ###  
1XMI_E       2 TTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFslLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLL 81   human
1R0Z_D       2 TTGIIMENVTAFWEEGFGELLEKVQQSNGDRKHXSDENNVSFSHLclVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLL 81   house mouse
1R0Z_C       2 TTGIIMENVTAFWEEGFGELLEKVQQSNGDRKHXSDENNVSFSHLclVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLL 81   Mus musculus
P26363     390 TTEVAMENVSASWDEGIGEFFEKAKLEVNGGNISNEDPSAFFSNFslHVAPVLRNINFKIEKGQLLAIAGSTGAGKTSLL 469  African clawed frog
P26361     389 TTGIIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLclVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLL 468  house mouse
XP_416011  481 TTGVEVDKVTAFWDEGIGELFVKAKQENNNSKAPSNDNNLFFSNFplHASPVLQDINFKIEKGELLAVSGSTGSGKTSLL 560  chicken
XP_687479  390 ITELELQDVTASWDEGPGELLERIKQENKANGHHNGDAGLFFTNL--YVAPVLKDISLKLKKGEMLAVTGSMGSGKSSLL 467  zebrafish
Feature 1                              #                                                       
1XMI_E      82 MMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITL 161  human
1R0Z_D      82 MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTL 161  house mouse
1R0Z_C      82 MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTL 161  Mus musculus
P26363     470 MMIMGELEPSAGKIKHSGRISFSPQVSWIMPGTIKENIVFGVSYDQYRYLSVIKACQLEEDISKFPEKDNTVLGEGGITL 549  African clawed frog
P26361     469 MLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTL 548  house mouse
XP_416011  561 MLIMGELEPSEGKIKHSGRISFSPQVSWIMPGTIKENIIFGVSYDEYRYKSVIQACQLEEDILKFPDKDYTVLGEGGIIL 640  chicken
XP_687479  468 MTILGELVPSSGKIRHSGRISYSSQTAWIMPGTIRDNILFGLTYDEYRYKSVVKACQLEEDLAALPEKDKTPMAEGGLNL 547  zebrafish
Feature 1                             ##                               #                       
1XMI_E     162 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYG 241  human
1R0Z_D     162 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYG 241  house mouse
1R0Z_C     162 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYG 241  Mus musculus
P26363     550 SGGQRARISLARAVYKDADLYLLDSPFSYLDLFTEKEIFESCVCKLMANKTRILVTSKVEQLKKADKVLILHEGSCYFYG 629  African clawed frog
P26361     549 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYG 628  house mouse
XP_416011  641 SGGQRARISLARAVYKDADLYLMDSPFGYLDIFTEKEIFESCVCKLMANKTRILVTSKLEHLKIADKILILHEGSCYFYG 720  chicken
XP_687479  548 SGGQKARVALARAVYRDADLYLLDAPFTHLDIATEKEIFDKCLCKLMASKTRILVTNKIEHLKRADKILLLHNGESFFYG 627  zebrafish
Feature 1                                                
1XMI_E     242 TFSELQNLQPDFSSKLMGCDSFdqfsaERRNSILTETLRRFS 283  human
1R0Z_D     242 TFSELQSLRPDFSSKLMGYDTFdqfteERRXXILTETLRRFX 283  house mouse
1R0Z_C     242 TFSELQSLRPDFSSKLMGYDTFdqfteERRXXILTETLRRFX 283  Mus musculus
P26363     630 TFSELEDQRPEFSSHLIGFDHFn---aERRNSIITETLRRCS 668  African clawed frog
P26361     629 TFSELQSLRPDFSSKLMGYDTFdqfteERRSSILTETLRRFS 670  house mouse
XP_416011  721 TFSELQGQRPDFSSELMGFDSFdqfsaERRNSIITETLRRFS 762  chicken
XP_687479  628 TFPELQSERPDFSSLLLGLEAYdnisaERRCSILTETLHRVS 669  zebrafish

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