1FFT


Conserved Protein Domain Family
CyoB

?
COG0843: CyoB (this model, PSSM-Id:223913 is obsolete and has been replaced by 440605)
Click on image for an interactive view with Cn3D
Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion]
linked to 3D-structure
Statistics
?
PSSM-Id: 223913
Aligned: 60 rows
Threshold Bit Score: 328.87
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
1FFT_A    38 FGKWtYL-WKEWLTSVDHKRLGIMYIIVAIVMLLRGFADAIMMRSQQALASagEAGFLP---PHHYDQIFTAHGVIMIFF 113 Escherichia coli
14601522   1 --------MSGGKVSFSAEDRFTKVTMLVAFLMLPLGGLFGILQLFKRTPN--FPDPVS---DSTYYTALTGHGVVLAIV 67  Aeropyrum pernix
15613302   5 TALRyQKlTITDIVTKPDRKLALTNINIAYAAFLVG-TLCGLLQVFIRNDAiqLPAWLD------YYQILTAHGVLLALV 77  Bacillus halodurans
18312568   1 ----mREkLFHYLTTTNAHYIGILYILLSIINFVLAGIAAMYMRLTIANTPp-GSPVQDpfnELLYTWFMSLHGLGMLLL 75  Pyrobaculum aerophilum
18312579   1 --------MEVP-NKFRIEDRVAKVALVFSYVLLLLGGLFGFLQVLSRTPG--MPKLET---AQLYYEGLTLHGVALAIL 66  Pyrobaculum aerophilum
15897014   4 MGLKdVIvDIFQLDKDWTTRIVMGMLVLGVIWGLLGVIDSLMVRLVEASWGlsAVLPLT---PQEYFAGITLHAERDLFG 80  Sulfolobus solfatar...
15899380   1 -MSQlLNqIKDTVIPKNTLNVVWLYTIGSIFWLGVLGIAAMNLRTYLTYNS--NSPNVG----ELYYSALTIHGWAGMFG 73  Sulfolobus solfatar...
461784    51 THEEkPGgIIRWFTTVDHKDIGILYGVYGTIAFAWGGVSVLLMRTELATS---SETLIS---PSLYNGLLTSHGITMLFL 124 Halobacterium sp. N...
16554513   1 ---------MTFIDKFPTEAKLVRWHFGVGFVALAIGGLFGLVQALYRTGHlrSLLPIN---AAQYYTVLTGHGVLLALV 68  Halobacterium sp. N...
15607124   1 ---------MWVMQVSNAIKFIILTEIIFPTLLLVFGIYHGVMQVFYRSGIikAESFLG----IDYYQGLTLHGVINVIV 67  Aquifex aeolicus
1FFT_A   114 VAMPF-VIGLMNLVVPLQIGARDVAFPFLNNLSFWFTVVG-VILVNVSLGV-GEFAQ-------TGWLAYPPLSGIEYSp 183 Escherichia coli
14601522  68 FTTFF-IMGISAFIVSRELKTNFSRLALN--LSLGLALLG-T--VLAAVAIlSGQAK-------VLYTFYPPLKANP--- 131 Aeropyrum pernix
15613302  78 FTTYF-IFGFFYTGMSKTLGSFSDNVRMTSWIGFFVMTLG---TIITVIMIvSGEAS-------VLYTFYAPLQANG--- 143 Bacillus halodurans
18312568  76 FAMQA-VAGAANILVPKLIGAPDMYWPRINALSFWMQVPA-TVFMWSSLLFwQHGDS-------IGWTLYPPLSTISKS- 145 Pyrobaculum aerophilum
18312579  67 WTAFF-IVALAVFVITRELNINMNGPLLR--AGCILAVVG-S--LMGAVAIlSGQAT-------VLYTFYPPLQASP--- 130 Pyrobaculum aerophilum
15897014  81 FAQQViYAIFIYFTIKLLNIEPRAKWMLN--LGFIAVNISmMFMEGPILIIpAAGFDnyf--saTIWYYLSPLGIPGYSq 156 Sulfolobus solfatar...
15899380  74 FVPLA--A-AAVIAFAMYKSNLSIVHTKLMAIFFWLSNIFlAIGLAGS-------PD-------MGWYMYPPLAIESGS- 135 Sulfolobus solfatar...
461784   125 FGTPM-IAAFGNYFIPLLIDADDMAFPRINAIAFWLLPPG-AILIWSGFLIpGIATAq------TSWTMYTPLSLQMSS- 195 Halobacterium sp. N...
16554513  69 FTTFL-ICGFFVWAVTRSL-DRPLSHPRLVWTGFISMVVG-TTLAAITILN-GFAPElpfgsanVLYTFYPPLQAHP--- 141 Halobacterium sp. N...
15607124  68 YTTIF-IVGFSNAIVAYSL--KKPLREKVQWIALGMMVIG---TLMAAWAMfTGRAT-------VLYTFYPPLIAHW--- 131 Aquifex aeolicus
1FFT_A   184 GVGVDYWIWSLQLSGIGTTLT-GINFFVTILKMRAPGMTMFKMPVFTWASLCANVLIIASFPILTVTVALLTLDRYLGTH 262 Escherichia coli
14601522 132 -----LFYIGAALLIVGSWVF--MFDLFRLVLKFRRENPDLKVPVATYGILTAWVIWLVATPPVALEVLLLLVPMSLFGM 204 Aeropyrum pernix
15613302 144 -----FFYIGLAFVVVGTWIS-GFALIGHYVSWKKR-HKGSLSPLFAFMTVTTLILWIIACLGVVATVLFQFIPLAFGWV 216 Bacillus halodurans
18312568 146 -IGVDLILLGIIIAGFSSTLT-GINFILTITRLRRPDIKMLDMSLFAWSVLAASMLMVTALPPLAAGAIMLLLERHLGMH 223 Pyrobaculum aerophilum
18312579 131 -----LFFIALAIILIGTWFI--GAAVLEAIWRWKKLNPGKEVPLATYGVFTTIAIWLLATPPLAYAVLFRSLPMSLFNA 203 Pyrobaculum aerophilum
15897014 157 YVVSPLFFWGWILLDAFTYIG---GFWIVYHYYLASKNMKEKLPVPLVYFLMVTLMFMIGYSGVTAADVWDVLAFYHIVG 233 Sulfolobus solfatar...
15899380 136 -NFHAFLFYTTPALMGMAYLSlTLAFILQTAMFIILIADAYATKPKNERLNIFGAYGVAFAIVIAITLPALAASTLWYTL 214 Sulfolobus solfatar...
461784   196 -PAVDMMMLGLHLTGVSATMG-AINFIATIFTERGEDVGWPDLDIFSWTMLTQSGLILFAFPLFGSALIMLLLDRNFGTT 273 Halobacterium sp. N...
16554513 142 -----AFYVGAALLIVGSWIV-GADYFLTYRAWRAD-NPDERIPLQTFMVLATFVMWYLSSAGVAVEVVAFLIPWSMGWI 214 Halobacterium sp. N...
15607124 132 ---T--FYLGAVLLVLGSLVPfFFDWIPSAIQWKRE-NPDQKLPLAVFGTFVNFILWTIMIVPVAIEILFQLLPLSLGLV 205 Aquifex aeolicus
1FFT_A   263 FFTND-----MGGNMMMYINLIWAWGHPEVYILILPVFGVFSEIAATFSRKR--LFGYTSLVWATVCITVLSFIVWLHH- 334 Escherichia coli
14601522 205 EVDVL-----------LARTLFWWFGHPLVYFWLLPAVALWYYAIPRILGVP--LFSETMAKVAYILYMIASTPVGLHHq 271 Aeropyrum pernix
15613302 217 DTINVg----------LSRTLFWYFGHPLVYFWLLPAYMAWYLIVPKLLGVN--VFSDSLARLAFILFLLFSIPVGFHHq 284 Bacillus halodurans
18312568 224 FFTPVpgdpaASGDPRLFQHIFWFFGHPEVYILVLPAMGLVSEVIQRMARRR--AYGYTAIAISSVAIASISFAVWMHH- 300 Pyrobaculum aerophilum
18312579 204 PVDVL-----------EWRLWFWFFGHPLVYFWLVPAVTIWYTILPRVLGTE--VFSKTAAKAAFMLYLIASVPVGLHHq 270 Pyrobaculum aerophilum
15897014 234 LDPIAn------------QIAFWIFGHAIVYMAWVPAVGALYLLIPMLANKP--LYSDRMGRISALLYLIFSNNVPIHH- 298 Sulfolobus solfatar...
15899380 215 YFFAG-----VPVNPLLWALLFWFYGHPVVYYVPFPLFGALYYYIPKYAGRS--LFSEKWARWNIYLLSIGSMLIWVHH- 286 Sulfolobus solfatar...
461784   274 FFTVA------GGDPIFWQHLFWFFGHPEVYVLVLPPMGIVSLILPKFSGRK--LFGFKFVVYSTLAIGVLSFGVWAHH- 344 Halobacterium sp. N...
16554513 215 SQVDP----------LLTRTLFWYFGHPVVYFWLLPAYLAWYTILPKLAGGK--LFSDPLARVVFVLFVLLSTPVGFHHq 282 Halobacterium sp. N...
15607124 206 DEINP----------LLARTLFWFFGHPVVYFWLLPAYVALYTILPKIVSEKgkLYSDPAARLAFILFLIFSLPVGLHHq 275 Aquifex aeolicus
1FFT_A   335 FFTMGAGANVNAFFGITTMIIAIPTGVKIFN-WLFTMYQGRIVFH----------------------SAMLWTIGFIVTF 391 Escherichia coli
14601522 272 FVDPGIGPFFKLVHTLVTFVVATPSMLTAFNiLATLERAGRMRGGrglvgwv--------fklpwgsLAFSGLMLPIILF 343 Aeropyrum pernix
15613302 285 AVDPGIDHFWKFLQTVLTFMVIIPSLMTAFSmFAVFEISGREKKGkglfgwf--------tklpwrdVRFLSLFLAMLFF 356 Bacillus halodurans
18312568 301 MFTAVQDFAPRVAMAIATMAVAIPSGVKVFN-WVATLYGGRIQLK----------------------APMLFMLTFLLFF 357 Pyrobaculum aerophilum
18312579 271 FVDPGVHPVYKYLHTVLTYLVAVPSFITAFNvIATLEKAGRMRGGkglfgwit-------alpwgkdPVFTGITFAIILF 343 Pyrobaculum aerophilum
15897014 299 LYMVNLPIALKLLQEVLTYSVVIPSMMTFFNlWATAKGADVKWN-----------------------IITAWTVTSFAGA 355 Sulfolobus solfatar...
15899380 287 LQTWPLPIDLRIWVNLSTLILASGSGLTVLNlGLTILLSQKYNWKd---------------------PVGMGGLIALVGF 345 Sulfolobus solfatar...
461784   345 MFTTGIDPRIRSSFMAVSLAISIPSAVKVFN-WITTMWNGKLRLT----------------------APMLFCIGFVQNF 401 Halobacterium sp. N...
16554513 283 YTDPGIAEGFKFIAMTNTFMLLLPSLLTAFT-VVASLEHGARQRGgsgyigwl-------ralpwgkPSFSAMALAGLVF 354 Halobacterium sp. N...
15607124 276 FTDPGITNTWKLIHALFTFGVALPSMITAFTvATSLEYSVKAEHPelknskfywwtflpfmrlegnkWMFSYFFAGLVLF 355 Aquifex aeolicus
1FFT_A   392 SVGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCFAGMTYWWPKAF-GFKLNETWGK---RAFWFWIIGFFVA 467 Escherichia coli
14601522 344 ANGGITGIINASFQLNTVVHNTTWIVGHFHTTVGGASALTFMAAMLLLAREMM-KREVIAPWLAv--AAFYMWTVGQYLF 420 Aeropyrum pernix
15613302 357 IPGGIGGIINASFQLNEVVHNTLWVVGHFHITVGAPVAMTFYGLTFWLVPYLT-GRPFSRLAKKlalIQVITWSLGMFLM 435 Bacillus halodurans
18312568 358 IVGGVTGVFFPVITLDLHLHDTYFVLGHFHYIVN-AIAFGVFGALLYYFPHLT-GRWYDERLAR---ISWALITVGGFAT 432 Pyrobaculum aerophilum
18312579 344 GIAGFSGVVNASFNVNYNVHNTAWVVGHFHLTVGGGVTLTFIATSFLLVPLLF-GRDYVAKKLLi--AVPTLWFVGQLIF 420 Pyrobaculum aerophilum
15897014 356 IAAGVTGISNATISFDAIVHNTDWVVGHFHAMILFSIVPAAWAVLYIMITMMS-GRIWFSKGMAw--LHYIGYMIGTTFL 432 Sulfolobus solfatar...
15899380 346 ILAGVQALVLPENSINPLFHNTYYVVGHFHLMIWTLIVMGFTTVFLDMLKSTFgGFNFSEQASKw-mRIGMIWWTAPFLG 424 Sulfolobus solfatar...
461784   402 IIGGVTGVFLAVIPIDLILHDTYYVVGHFHFIVYGAIGFALFAASYYWFPMVT-GRMYQKRLAH---AHFWTALVGSNAT 477 Halobacterium sp. N...
16554513 355 AAGGFSGMINAGMNINYLIHNTIWVPGHFHLTVGTAFALTMMGVAYWLVPQIT-GKRLQHRTLAa--IQPFVWVIGMTLM 431 Halobacterium sp. N...
15607124 356 FIGGITGIVNASYNVNLVVHNTAYVPGHFHTTVGGLVLLVFFALSLYMVSKLR-GSEVKLKGLAv--LAPYFWMQGMFMF 432 Aquifex aeolicus
1FFT_A   468 FMP-LYALGFMG-MTRR----LSQQI-----------DPQFHTMLMIAASGAVLIALGILCLVIQMYVSIRDRDqnRDLT 530 Escherichia coli
14601522 421 SIG-YYVAGVMG-APRRt--sELLYGgl--------apTEWIPWLQLGAIGGMVFWIAGVILVGLIAATLLFGK-----K 483 Aeropyrum pernix
15613302 436 STA-QHVLGLLG-APRRt--aFTEYGghea---altwFDGIFSNHVTMAVGGTILFLSAMLLIVIVVISLVGPK----AT 504 Bacillus halodurans
18312568 433 YTL-MSAAGVLG-SPRR----YAAAP-----------TPDVNPYHFAMTAFTIILAAGVALLFANLLYSYFNGRp-VANR 494 Pyrobaculum aerophilum
18312579 421 GIG-YHVAGLLH-APRRtftaEAGYLndpnllntlhlVGQWTPWLQLGAIGGVIFALGGALFLLLTFVSIFKG------- 491 Pyrobaculum aerophilum
15897014 433 IVG-FELIGFYG-VVRR----AEIYPr----------VPGLIDAEVIATVGAIIADLATLVWFLNLVLTLVKGRlvRLEG 496 Sulfolobus solfatar...
15899380 425 VGYtMSVIGYLG-MLRR----MIAYP------------SVFQPYNLLESMLAEIGIPGLLVTIFVAIVDALAYA------ 481 Sulfolobus solfatar...
461784   478 FLA-MLWLGYGG-MPRR----YATYIp------------QFATAHRLATVGAFLIGVSTLIWLFNMATSWREGP--RVDS 537 Halobacterium sp. N...
16554513 432 SNA-MHRGGLAG-LPRRtakpLFRGEgaap---fdpvVGTISEMQLQIAIGGTLLFVSLALFLAVMVGTWLSRP---GMG 503 Halobacterium sp. N...
15607124 433 SYA-MMVGGVVVgFPRRtnagLTYLNpds-----plyRPEWTGYAQLAAVGGVLLAIGFAFYFASLIATALAPKvrESTL 506 Aquifex aeolicus
1FFT_A   531 GDPWG-----GRTLEWATSSP--PPFYN--FAVVP--HVHERDAFWEMKEKGEAYKKPDhy---eEIHMPKNSGAGIVIA 596 Escherichia coli
14601522 484 VSVPQge--rVLAFDETTPGR--IENGKyiLEEVRfwIVVTIALAILGYIGPLYEIFARg-------LVPVGPVPP---- 548 Aeropyrum pernix
15613302 505 EEEIV-----EFPLAESDPSSt-PKLLEkwWVWIGi-AAFLIIAAYAIPIAELLHHMESg--------SRGFRTW----- 564 Bacillus halodurans
18312568 495 EDPWG-------VSKYGLPDVi-PPLVHprHEPNPwpFILGVGMIPLGLGVLSLLRDVSp----iLKNYAFLSAPQFGML 562 Pyrobaculum aerophilum
18312579 492 ---PPfr--mDGAALQISP----TPEKAtfFDRLGllVGIALVIIIIAYSLPAIEIYTRg-------LSPAPPYWPTGAA 555 Pyrobaculum aerophilum
15897014 497 LSLPQvagavAMSLEWPSSISftSPVLKfiKTHNTskKGLASTIVLAIVGAILIVVSAVplafagDAYTPQTWIWITILT 576 Sulfolobus solfatar...
15899380 482 --SKQ----------GIFSSPs-PSTSP---SNLP---VMAKDGVKNNG------------------------------- 511 Sulfolobus solfatar...
461784   538 TDPWDleetdQFTNDWAWFRAk-EETTVlpDGGDE--AQSEADAVTDGGQPAADSDTES--------------------- 593 Halobacterium sp. N...
16554513 504 RLSVN------GSIPSALSGP--ADSPRi-LDNLKvwTAIAVVLVIIAYGLPLYGMLADg------VLAPGSPGFPV--- 565 Halobacterium sp. N...
15607124 507 EFPIA------DAYHDAPAPLl-NNLKTwtVAAIIlaVLSYIPPLYDASVRGVFFKSPAynekfpMPLKQLQGAEKKEEK 579 Aquifex aeolicus
1FFT_A   597 AFSTIFGFAMIW 608 Escherichia coli
14601522     ------------     Aeropyrum pernix
15613302     ------------     Bacillus halodurans
18312568 563 AIGTFIGLGVAW 574 Pyrobaculum aerophilum
18312579 556 AG---------- 557 Pyrobaculum aerophilum
15897014 577 IGIIFSAIGSLK 588 Sulfolobus solfataricus
15899380     ------------     Sulfolobus solfataricus
461784       ------------     Halobacterium sp. NRC-1
16554513     ------------     Halobacterium sp. NRC-1
15607124 580 KELSKAEGGITQ 591 Aquifex aeolicus
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap