Conserved Protein Domain Family
Csl4

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COG1096: Csl4 (this model, PSSM-Id:224021 is obsolete and has been replaced by 440713)
Exosome complex RNA-binding protein Csl4, contains S1 and Zn-ribbon domains [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 224021
Aligned: 13 rows
Threshold Bit Score: 180.225
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
20089605 124 DLEKGGFVLPGELVGTTEEFKSGAGTTVI--GGDIYSTATGNVLIDRKSRVVSVKPNTL-------------TPNILKVG 188 Methanosarcina acet...
11497822   1 ----MRFVMPGDRIGSAEEYVKGEGVYEE--GGELFAAVAGKLII--KDRVAKVESISP-------------IPEIVKG- 58  Archaeoglobus fulgidus
14600717   7 GVVEKGKVMPGDVLATIEEFLPGEGVYVDpvKGFIRAAAPGVAYLDMSRRIAYVKPHKK--------------PQTPGPG 72  Aeropyrum pernix
20093500   4 YVEPGKFVLPGDKITVAEAFYPGPGTYED--GGVVRAAITGRVEVDLEEREVRVEPYVD-------------TPPKLKRG 68  Methanopyrus kandle...
15679318   2 KVKSGDMVFPGDFLAVSEEVLPSEGTYDE--DGKIKSLVVGEVSRDDRNKSIKVISKLN-------------TPPTLKRG 66  Methanothermobacter...
14520270  10 TIKNGDFVLPGDYLGVIEEYLPGEGVIVE--DGNLYSARAGWVKINKDKVEISLEPASS-------------VPPIPKKG 74  Pyrococcus abyssi
18313005   1 --MKKTIVTPGELVAYAEEFETKGAVLAV--DHKYHASALSVATYDEKSHVAVVKPVRG--------------SAYPQPG 62  Pyrobaculum aerophilum
14589998  10 TIKDGDFVLPGDYLGVIEEYLPGDGVIAE--DGNLYSTRAGWVRINKDKIEISLEPASK-------------VPPVPKKG 74  Pyrococcus horikoshii
19076010   1 ----MNLVLPGQVVARGAP--NGEGTVKR--GDYIISTRTGIFDPEKNSVTYPRKVEET--------------AVLPNVG 58  fission yeast
15897237   1 MRTQGELTLPGEELAVIEEFMTGDGTYEQ--NGIVRAAVVGKIFYDMLNRKSNVLGFKKi------------IFQHLKKA 66  Sulfolobus solfatar...
13541908   1 MQDDKKVAFPGDMIATTEEYLPGKNTEEK--NGEIIAVKFGQIIRDDINLLISVDTQKK-------------EFTLKKG- 64  Thermoplasma volcanium
16081977   1 MEGDKKVAFPGDIIATTEEYLPGRNTEEK--NGEIVATKFGNIVRDDINLMISVDTGKK-------------EFFLRKG- 64  Thermoplasma acidop...
1730832   58 ATLVGTVRCEEEKKTDQEEEREGTDQSTEe-EKSVDASPNDVTRRTVKNILVSVLPGTEkgrktnkyanndfANNLPKEG 136 baker's yeast
20089605 189 DIVYGKITDVRESGAMVEVAGIEGKEn--------------REIVNTRPGDIHVSNVRDSYVKRLS-------------- 240 Methanosarcina acet...
11497822  59 DVVLGRVVDLRNSIALIEVSSKKG-En--------------RGPSNRGIGILHVSNVDEGYVKEIS-------------- 109 Archaeoglobus fulgidus
14600717  73 SEVAALVTGVRGDLVVAEVYGVVRLSpkp---------awlYELPSPYSAAIPISQIADEYIKNIE-------------- 129 Aeropyrum pernix
20093500  69 ASVIGRVQSVKEQVVLVKICFVDDRTd--------------REPPTSGVGGIHISKVRDAYVEDLA-------------- 120 Methanopyrus kandle...
15679318  67 SRVIGEVIDVRGQRALVRIHSIKGNR---------------RALATYFVGGVHVSQARKGYLSKLT-------------- 117 Methanothermobacter...
14520270  75 DIVYARVIDVKQQAVLLRMIKIEGQEn--------------REIATSKLAGIHISQVKDGFVEDLR-------------- 126 Pyrococcus abyssi
18313005  63 AVVYCQVTGKGRRAYQLRCFAVEEGK---------------------NAADLKYPVSGVLPYFFSD-------------- 107 Pyrobaculum aerophilum
14589998  75 DIVYARVLEVKQQAVLLKMIKIEGQEg-------------nREIATSKLAGIHISQVKDGFVEDLR-------------- 127 Pyrococcus horikoshii
19076010  59 SIVLARVSRINARQATVNISVVDDVC-----------------TKDEFQGVIHVQDIRATEKNKVKv------------- 108 fission yeast
15897237  67 KYVIGIVNSIKEDSALVSIVGIEE-----------------RGLASPISAYLHISQISNKKINNVT-------------- 115 Sulfolobus solfatar...
13541908  65 DIVYGQVVKGEQHRYIVRIVGAFQKG---------------LG---LREIDEEMQLSLGIARRPQS-------------- 112 Thermoplasma volcanium
16081977  65 DVVYGQVIKNDAHRYIVRVVGVFQRG---------------TG---LKEVDEEMQLSFGMSRRPQS-------------- 112 Thermoplasma acidop...
1730832  137 DIVLTRVTRLSLQRANVEILAVEDKPspidsgigsngsgivAAGGGSGAATFSVSQASSDLGETFRgiirsqdvrstdrd 216 baker's yeast
20089605 241 -----DEFRPSDIVKARVIDV---DRMRLTTSEDSLGVVKAYCSNCRGELVL--EGKKLKCPVCNMTETRKISTEYGKGI 310 Methanosarcina acet...
11497822 110 -----EAVGYLDILKARVIG----DNLRLSTKEEEMGVLRALCSNCKTEMVR--EGDILKCPECGRVEKRKISTDYGKGE 178 Archaeoglobus fulgidus
14600717 130 -----DYYRMGDWILAKIVSRt--PPFTLSTVEPRYGVVYAICSRCGAVMEFq-SERSMKCPKCGNVEKRKVSIHAKSRH 201 Aeropyrum pernix
20093500 121 -----DEFQPGDIVRARVVSTk--MPVQLSTVGKEYGVVLAYCTRCRSELEKv-KGRTLRCPVCGHTETRKVAAGYLREA 192 Methanopyrus kandle...
15679318 118 -----DAFRIGDIVEARVTKImglDGIDLQTSGRDLGVIKAMCTRCRHFMEVn-GRDEVRCPNCENREKRKLSVNYEG-- 189 Methanothermobacter...
14520270 127 -----NEFKIGDIVRARVIADe-kSPIQLTTKDPDLGVVYALCSKCRTPLVR--KGNQLVCPRCGNVETRKISTLYRKVK 198 Pyrococcus abyssi
18313005 108 -----GDIGIGDYLRAKVVSTy-gPPIVVSIRGPTYGVILSRCPKCGAVLKR--RGMMLYCPNCGAEVKRKIAVGHYAT- 178 Pyrobaculum aerophilum
14589998 128 -----NEFKVGDIVRARVIADe-kSPIQLTTKDPDLGVVYALCSKCRTPLVR--KGNQLVCPKCGNVETRKISNLYRKVK 199 Pyrococcus horikoshii
19076010 109 ----qNSFRPGDIVRALVISLgdgSSYFLTTARNDLGVIFAQSSETGEQMFP--VDYQHMQTKSGYTEMRKCAKPILDE- 181 fission yeast
15897237 116 -----DAIKIGDVIKAKLLSYt--FPLALTIKMKDLGVIYARCSRCGYLLIKq-DENNLKCQRCGNIEQRKIGSYMVKKG 187 Sulfolobus solfatar...
13541908 113 -----DFIAIGDLIRGYVIRTg--DFPEISINGNHYGVISAVCLRCRQPLVK--RGITLYCENCQRTEIRKMADDYGNVD 183 Thermoplasma volcanium
16081977 113 -----DFVAVGDLIRGYVVRTg--DMPEISINGNHYGVISAVCSRCRQPLVK--KNITLYCENCQRTEIRKIADDYGSVD 183 Thermoplasma acidop...
1730832  217 rvkviECFKPGDIVRAQVLSLgdgTNYYLTTARNDLGVVFARAANGAGGLMYatDWQMMTSPVTGATEKRKCAKPF---- 292 baker's yeast
20089605 311 R 311 Methanosarcina acetivorans C2A
11497822 179 W 179 Archaeoglobus fulgidus
14600717 202 L 202 Aeropyrum pernix
20093500 193 E 193 Methanopyrus kandleri AV19
15679318     -     Methanothermobacter thermautotrophicus str. Delta H
14520270 199 L 199 Pyrococcus abyssi
18313005     -     Pyrobaculum aerophilum
14589998 200 I 200 Pyrococcus horikoshii
19076010     -     fission yeast
15897237 188 G 188 Sulfolobus solfataricus
13541908 184 I 184 Thermoplasma volcanium
16081977 184 I 184 Thermoplasma acidophilum
1730832      -     baker's yeast
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