Conserved Protein Domain Family
PAS

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COG2202: PAS (this model, PSSM-Id:225112 is obsolete and has been replaced by 441804)
PAS domain [Signal transduction mechanisms]
Statistics
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PSSM-Id: 225112
Aligned: 441 rows
Threshold Bit Score: 34.8248
Created: 7-Oct-2002
Updated: 23-Jan-2015
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
17229587  556 VISHSPQLLYIFEPTTGSNIYLNGQSVDILGytpeeikargvkfFLDVLHPDDLYLLErnLNYWQNAADGEVLTTEWRMK 635  Nostoc sp. PCC 7120
20089440  110 kidqalargydglraagdnrwlekegwngfvdyenkmdaiidkhqVIALCPYYLDMCS--TAEIVDVVSN---------- 177  Methanosarcina ac...
20090134  110 klnkalangydglrltgntfwlekkdwndfvdyeeevdrvignyrMIALCTYCLEKCN--STEIVDVVIN---------- 177  Methanosarcina ac...
20090138  110 kigqalkngyeglrtatniswlekkdwndfvdyeeqgdgvvsncpVLSLCTYSLDRCN--AGEIIDVVAN---------- 177  Methanosarcina ac...
20090183  110 kidkalargydglraagdnrwlekegwsgfidyenkvdaiigkshVIALCPYYLDMCS--TTEVIDVVSN---------- 177  Methanosarcina ac...
20090927  110 klnqalesgyeglrvtgdacwlekegwtdfvnyenkvdsviekhqMISLCSYHLEMCN--ATEILDIAFN---------- 177  Methanosarcina ac...
20091712      --------------------------------------------------------------------------------      Methanosarcina ac...
20092182  335 klnkalangydglrltgntfwlekkdwndfvdyeeevdrvignyrMIALCTYCLEKCN--STEIVDVVIN---------- 402  Methanosarcina ac...
20092820  115 klnnaladgydglrlteniswlekenrsdflkfeekidsvignhrIAALFTYSLDMFD--TIEIIDIVAN---------- 182  Methanosarcina ac...
17229973  177 IFETVNDGIGVIDLDTSKLVAVNPAFCEMHGysqse---flnlnPTDYIHAESYEKFG---DFIKTVKAGQKYHTQAVGI 250  Nostoc sp. PCC 7120
17229587  636 HKNGSWRWLRSRDVVFaRDENHFPCKVLGttqditdsklaeleiihsrdlleAIYNGSTDALFLVNPQTLLiidcnqqAV 715  Nostoc sp. PCC 7120
20089440  178 -----------HQFAL-IKREGKWER--------------------------TENSGRKKAEKEAIQAAKN-------WK 212  Methanosarcina ac...
20090134  178 -----------HQFAL-IKREEKWEQ--------------------------IESSKRKRAEETALQAAKD-------WK 212  Methanosarcina ac...
20090138  178 -----------HQFAL-IKREGKWDP--------------------------IESPRRKRAEETALQATKN-------WE 212  Methanosarcina ac...
20090183  178 -----------HQFAL-IKREEKWER--------------------------IENSGRKRAEKEAIQAAKN-------WE 212  Methanosarcina ac...
20090927  178 -----------HQFSL-IKREERWDR--------------------------IENSGRRRAEKAVFQAAKD-------WE 212  Methanosarcina ac...
20091712    1 ------------------------------------------------------------------------------ME 2    Methanosarcina ac...
20092182  403 -----------HQFAL-IKREEKWEQ--------------------------IESSKRKRAEETALQAAKD-------WK 437  Methanosarcina ac...
20092820  183 -----------HRFSL-IKRKGAWQQ--------------------------IESHKHKKVEESHKHKKVE-------NT 217  Methanosarcina ac...
17229973  251 CKDGTSFDIEVTGKLLyYDGKPHAIAVVR------------------------DISERVEAEREQKR-----------LL 295  Nostoc sp. PCC 7120
17229587  716 QVFAASGkeeligsdgqtlqkqrftpDEVTSVIEelnhqgfwsreveyitkQGKFFWGNLAVKQIYVAGEEIHLVRVTDI 795  Nostoc sp. PCC 7120
20089440  213 QTFDAVP-------------------DLIAIIDD-----------------KYRVIRTNRAMAERLGITPEECAGLPCYR 256  Methanosarcina ac...
20090134  213 YTFDAVP-------------------DLIAILDT-----------------EYRIVRANRAMAAKLGVTPEECVGLTCYH 256  Methanosarcina ac...
20090138  213 FTFDAVP-------------------DLIAILDT-----------------EYRIVRANRAMAARLGRTPEGCAGLICYR 256  Methanosarcina ac...
20090183  213 YTFDAVP-------------------DLIAIVDD-----------------KYRVIRANRAMKAKLGVTPEECTELTCYH 256  Methanosarcina ac...
20090927  213 RTFDAVP-------------------DLVAIIDN-----------------ECRIVRANRAMAARLGVTQEECAGLTCHR 256  Methanosarcina ac...
20091712    3 ELLLNSP-------------------SPILRIEK-----------------EGVILYANKAGKLLLETWKSEVGEKVPVK 46   Methanosarcina ac...
20092182  438 YTFDAVP-------------------DLIAIIDT-----------------EYKVVRANRAMAAKLGVTPEECVGLTCYR 481  Methanosarcina ac...
20092820  218 AIRSVQG-------------------PEVRSKEAydh------------leELVKERTIQLKKAYIQLKESEKDLAEAQK 266  Methanosarcina ac...
17229973  296 AILEATP-------------------DIVGIADA-----------------SGINCYLNQAAQNLLGIPTTEKFPIASAT 339  Nostoc sp. PCC 7120
17229587  796 SQRKLAEIAlheremmlrsigdNLPNGAVYQIVRELDGSDRFSYFSAGIERlmevraedvladatllyrqlcaedIPSFV 875  Nostoc sp. PCC 7120
20089440  257 VIH--------------------RTNSPPPFCPHQQ-LLKDGAEHTAEVCeall------------------ggnFAVIA 297  Methanosarcina ac...
20090134  257 AIH--------------------GTDEPPSFCPHRQ-LLKDELEHTTEVCedcl------------------ggcFLVSV 297  Methanosarcina ac...
20090138  257 AIH--------------------GRDKPPSFCPYRQ-LLMDGVEHTEEVRedsl------------------ggdFILSV 297  Methanosarcina ac...
20090183  257 VIH--------------------GTDSPPSFCPHRQ-FLNDGVEHTAEVCenrl------------------ggyFVVSA 297  Methanosarcina ac...
20090927  257 VMH--------------------GTDEPPSFCPHKQ-LLKDGLERITEVHeell------------------ggdFLLSV 297  Methanosarcina ac...
20091712   47 IQKTVRKAT-------------LKKKPEFVELDVGEKTYSATLIPSADGk-------------------------yITLH 88   Methanosarcina ac...
20092182  482 AIH--------------------GTNEPPSFCPHRQ-LLKDGIEHTTEVCedcl------------------ggyFLVST 522  Methanosarcina ac...
20092820  267 MAH--------------------IGSWKWDIVTDEL-YWSDEVYHIFGFNphef------------------retFDIFF 307  Methanosarcina ac...
17229973  340 GVSMLER---------------FQTEIIPTVMEQG-IWSGESLMRSRNGEE------------------------FPVSQ 379  Nostoc sp. PCC 7120
17229587  876 QAVEESYChlsvfdiqlrvctPSGMWKWVQLRSTPRQLPDGR 917  Nostoc sp. PCC 7120
20089440  298 SPLHDSEG--------------RLAG-SVCVAHDINERKqee 324  Methanosarcina acetivorans C2A
20090134  298 SPLYDSKG--------------NLIG-SVHVARDITERKqte 324  Methanosarcina acetivorans C2A
20090138  298 SPLHDSEG--------------KLTG-CIHFARDITERKrae 324  Methanosarcina acetivorans C2A
20090183  298 SPLHDSEG--------------KLIG-SIYVARDINERKkve 324  Methanosarcina acetivorans C2A
20090927  298 SPLYDPDG--------------KIMG-CVHVARDITERKrae 324  Methanosarcina acetivorans C2A
20091712   89 ALDVTFSKqae--------kkLNCIDRHRETLAQIAELALKT 122  Methanosarcina acetivorans C2A
20092182  523 SPLHDSEG--------------KLIG-SVHVAHDISERKqae 549  Methanosarcina acetivorans C2A
20092820  308 DHIHPDDR--------------DFVNTAIKKALDGEQFNNNF 335  Methanosarcina acetivorans C2A
17229973  380 VIIAHKNE-------------QGEVEFLSTIARDIRDRQQIE 408  Nostoc sp. PCC 7120
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