Conserved Protein Domain Family
Trm5

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COG2520: Trm5 (this model, PSSM-Id:225318 is obsolete and has been replaced by 442010)
tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 225318
Aligned: 32 rows
Threshold Bit Score: 236.454
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
731672    75 RIPHVVKLNSSKPKDELTSVQNKKLKTADGNNTpv---tkGVLLHESIHSVEDAYGKlp----edALAFLKENSAeiVPH 147 baker's yeast
20090911   1 -MYRTIRVPPEKGEEIREKAVAGNFLDPARKIRki---qtSTGTFLEIPVTEAAGEIvg------dFPVIKQEKPefLEK 70  Methanosarcina acet...
3025176      --------------------------------------------------------------------------------     Methanocaldococcus ...
20094376   1 -------------------------------------------------------------------MLSREEFA----R 9   Methanopyrus kandle...
15679211     --------------------------------------------------------------------------------     Methanothermobacter...
14521471   1 ------------------------------------------------------------------------MRTqvIKP 8   Pyrococcus abyssi
14590661   1 ------------------------------------------------------------------------MRTqgIKP 8   Pyrococcus horikoshii
1351597    6 VQKSEAKYWKDVVQNKNKFLKNIGIISGPKLVDtysnqfeADFLKKCVLIPTSYNKEdlpkdildCPRIYLIEEEvkSVQ 85  fission yeast
13541905   2 PTSLACVIEAPMANEIIRRLMIEDLIRKDLKIK-------KIENEIFIPVKDGTNLQq-------CRIVYSDFDE---RH 64  Thermoplasma volcanium
15791245   1 MRSLAVVVPKPDSQRAIDGLEDEGVYDDRRKVRe------HDADHVELPVTAEPDAVp-------FERAIAQADP---DP 64  Halobacterium sp. N...
731672   148 EYV---LDYDFWKAEEILRAVLPEqFleeVPTGFTITGHIAHLNLRTE-FKP-FDSLIGQVILDKNNKIECVVDKVSS-- 220 baker's yeast
20090911  71 TC-----SLKEYLSGTLTEAEMKH-I---PS-GWHILGDIIIVSIPET-LES-KKIQIAEALLSMYPKCRSVVRDFG--- 135 Methanosarcina acet...
3025176    1 -------------------------M---GI-KYQKIGDVVIV--KKE-LS---EDEIREIVKRTKC-KAILLYTTQ--- 41  Methanocaldococcus ...
20094376  10 R-------LEEELP-----DVADS-----VPHRWQELGDVVVIRLFDE-RAWaYRREVGRILREVTG-ARSVVALRR--- 67  Methanopyrus kandle...
15679211   1 ---------------------MKT-M---K---WARIGDIIVLN---------READDPEALLEMEG-VRSVIRVEG--- 39  Methanothermobacter...
14521471   9 R-------IREILSRELPPDLLAL-L---PK-RWVKLGDILLLPLRPE-LEP-YKYRIAEVYAKVLG-VKTVLRKGH--- 70  Pyrococcus abyssi
14590661   9 R-------IREILSKELPEELVKL-L---PK-RWVRIGDVLLLPLRPE-LEP-YKHRIAEVYAEVLG-VKTVLRKGH--- 70  Pyrococcus horikoshii
1351597   86 TDEklqIKVLRYVSQILHTTVSEEqYp--VPSRFVIYPPLALLSLNSFgTKEwHLFFQSYANVDVKAGLFDIFAREWNvs 163 fission yeast
13541905  65 Y-----ENIKQTMASFIKRNGGDErS---LPDKWIKLGDAIFVK--EL-ID----QTTFEAFERFMG-VRRAYLYES--- 125 Thermoplasma volcanium
15791245  65 RAP----DLGDRLRERGWSAAERE-R---APSSWAVLGSVILADFTDC-PRP---GEVGAALLELHREADTVLDRGDG-- 130 Halobacterium sp. N...
731672   221 ---------IATQFRTFP-MKVIAGKSDSLVVEQKESn---CTFKFDFSK-----------VYWNSRLHTEHERLVKQYF 276 baker's yeast
20090911 136 ---------IEGKFRQPK-RELLLGSG-AETIHKEHG----CFFKQDVTK-----------VMYSKGNLEERKRMSKLGQ 189 Methanosarcina acet...
3025176   42 ---------ITGEFRTPH-VKILYGKE-TETIHKEYG----CLFKLDVAK-----------IMWSQGNIEERKRMAFISN 95  Methanocaldococcus ...
20094376  68 ---------VSGTFREPV-GEVVAGDRNAETVHRELG----IRFKLDPTR-----------VMFARGNLEERRRLLESDL 122 Methanopyrus kandle...
15679211  40 ---------IHGPLRRPR-VRVLAGSG-TETVHKENG----CLFRIDLSR-----------VMWSRGNINERARIPSLVE 93  Methanothermobacter...
14521471  71 ---------IYGETRKPD-YEILYGND-TITVHVENG----IKYKLDVAK-----------IMFSPANVKERVRMAKVAK 124 Pyrococcus abyssi
14590661  71 ---------IHGETRKPD-YELLYGSD-TVTVHVENG----IKYKLDVAK-----------IMFSPANVKERVRMAKVAK 124 Pyrococcus horikoshii
1351597  164 hiainepipVGDVMRRPLsLKPLYGDFGVLIDGNPSEqdfqKAFWVSCRQngiyqtwaplyTMFSRGNSIEKARVLNFSY 243 fission yeast
13541905 126 ---------VRGVERIPV-VRHLYGLR-GEIRHVEDG----LTYFFDPEK-----------IMFSAGNTNERTRIREMKL 179 Thermoplasma volcanium
15791245 131 ---------VAGEHRTPD-VSVVAGDGDTETVHVEHG----TRYALDLAA-----------VMFSPGNKAERARMGDATG 185 Halobacterium sp. N...
731672   277 QpGQVVCDVFAGVGPFAVPAGKKDVI--VLANDLNPESYKYLKENIALNKVAKT-------VKSFNMDGADFIRQSpqll 347 baker's yeast
20090911 190 --GEIVVDMFAGIGYFSIPMAVHAHPekIISIEINPESFAYLNENIRLNQVEDI-------ITPIQGDCAEAAPE----- 255 Methanosarcina acet...
3025176   96 E-NEVVVDMFAGIGYFTIPLAKYSKPklVYAIEKNPTAYHYLCENIKLNKLNN--------VIPILADNRDVELK----- 161 Methanocaldococcus ...
20094376 123 E-GKLVFDMFAGIGYFTLPAALAGAE--VIAAELNPVACRYLVENARLNGVEGR-------VRVFLGDCREVARFV---- 188 Methanopyrus kandle...
15679211  94 E-GETVVDMFAGIGYFSIPVAVHSDPgrVYSVELNPDSFELLKSNITLNRVEGI-------IEPILGDCREVAPE----- 160 Methanothermobacter...
14521471 125 P-NELVVDMFAGIGHLSLPIAVYGKAr-VIAIEKDPYTFKFLLENIQLNKVQDR-------MSAYNMDNRDFPGE----- 190 Pyrococcus abyssi
14590661 125 P-DELVVDMFAGIGHLSLPIAVYGKAk-VIAIEKDPYTFKFLVENIHLNKVEDR-------MSAYNMDNRDFPGE----- 190 Pyrococcus horikoshii
1351597  244 IkDEIIADLYAGIGYFTFSYVKAGASt-VFCWEINPWSVEALRRAALKNGWSIYvvrngenYEFKVGTHRIVVFLEsnvy 322 fission yeast
13541905 180 D-GMTVLDMFAGIGYFTLPAVKYGHAehTDACDINPEAIKFLKKNLSANGISKS-------VKPICGDARIACPI----- 246 Thermoplasma volcanium
15791245 186 P-GERVLDMFAGVGYFALPMARAGAT--VTAVEKNPTAFRFLAENAQLNDVAET-------LDTILGDCREVDAP----- 250 Halobacterium sp. N...
731672   348 q---qwiqdEEGGKITIPLPLkkrhr-sqqhnDQQPPQPRTKELIIP--SHISHYVMNLPDSAISFLgNFRGIFAAHTKG 421 baker's yeast
20090911 256 ---------GEADRVIMGYVG-----------TTHHYLEPGIKALKKs-GGILHYHETVPENLFRTR-PEERIKKAARCL 313 Methanosarcina acet...
3025176  162 ---------DVADRVIMGYVH-----------KTHKFLDKTFEFLKD--RGVIHYHETVAEKIMYER-PIERLKFYAEKN 218 Methanocaldococcus ...
20094376 189 ---------RAADRVLMGYLK-----------GTLKFLPYACRAVRD--GGVLVVHEVFQKRWGEDR-VAREVLNALPDG 245 Methanopyrus kandle...
15679211 161 ---------LDADRVIMGYVG-----------RTHHFLDAAMECVRD--GGVIHYHETAPEAIRFSR-PLRRIERAA--H 215 Methanothermobacter...
14521471 191 ---------NIADRILMGYVV-----------KTAEFIPKALSIAKD--EAIIHYHNTVPEKLMPEE-PFATFKKIAREH 247 Pyrococcus abyssi
14590661 191 ---------NIADRILMGYVV-----------RTHEFIPKALSIAKD--GAIIHYHNTVPEKLMPRE-PFETFKRITKEY 247 Pyrococcus horikoshii
1351597  323 aaerfskmnISARHINLGMLP-----------SSEKSWSTATSILKResHSFIHVHENVKDEDIET--YSSEVNSCFSKM 389 fission yeast
13541905 247 ---------KAYDLIIMGNFK-----------S-IEYLPAALIRSKAg-TKIILHHLVSQERLS--K-FIYDLENYCISL 301 Thermoplasma volcanium
15791245 251 -----------ADRIVMGYYDalgggpvgdaaSTPGYLDAALDNLVS--GGVLHAHSAVPEAELWER-PLSRLRAGCQRA 316 Halobacterium sp. N...
731672   422 ATdtiQMPWVHVHCFEKYPPGdqvtedELHARVHARIIA 460 baker's yeast
20090911 314 GK---KVEVLAIRRIKKYSPG------VLHVVVDARIFE 343 Methanosarcina acetivorans C2A
3025176  219 GY---KLIDYEVRKIKKYAPG------VWHVVVDAKFER 248 Methanocaldococcus jannaschii
20094376 246 -F---EGEVLEVRRVKSFSPA------LDHYAVELRVRR 274 Methanopyrus kandleri AV19
15679211 216 PR---RVSLLDKRVIKKYSPG------VWHVVLDVRIH- 244 Methanothermobacter thermautotrophicus str. Delta H
14521471 248 GY---EAEKINELRIKRYAPG------VWHVVVDIKVFK 277 Pyrococcus abyssi
14590661 248 GY---DVEKLNELKIKRYAPG------VWHVVLDLRVFK 277 Pyrococcus horikoshii
1351597  390 LA---KNTVCVTNCVKSFSPR------VSHIVYDIETV- 418 fission yeast
13541905 302 GY---FTSIQEWHIVKSYSPK------MFHVATTLEILK 331 Thermoplasma volcanium
15791245 317 GRp--APTVLDTRRVKSHSEG------VFHVVIDARVP- 346 Halobacterium sp. NRC-1
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