Conserved Protein Domain Family
AmpD

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COG3023: AmpD (this model, PSSM-Id:225567 is obsolete and has been replaced by 442259)
N-acetyl-anhydromuramyl-L-alanine amidase AmpD [Cell wall/membrane/envelope biogenesis]
Statistics
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PSSM-Id: 225567
Aligned: 31 rows
Threshold Bit Score: 187.184
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
17546515  24 PiwsASTLVLPLAGCESSLAQEAQNa----EYTIDASIQSPNQDSRVRTLVLHYT-AESLADSIASLTdpQKQVSSHYLV 98  Ralstonia solanacearum
15830207   4 VfwlIAVALL-LAGCAGEKGIVEKE-----GYQLDTRRQAQAAYPRIKVLVIHYT-ADDFDSSLATLT--DKQVSSHYLV 74  Escherichia coli O1...
7388492      --------------------------------------------------------------------------------     Haemophilus influenzae
15596004   1 -------------------MLTIDY-------N--SYRTTTPYGKRVRFLVLHYT-ALDFAASVKALT--TGAASAHYLI 49  Pseudomonas aerugin...
15892420   1 ------MSKSKAIENNGISNTNSPN---------GKYMAPRPEGVKPTCVVITYSvSKDIKAVREVLD--ERGASVHYII 63  Rickettsia conorii
15893281   1 -------------------MIVIDK----------TSYRAVGFDKRIKFLVLHYT-QCDFKQSLDFLT--GEKLSSHYLI 48  Rickettsia conorii
16764293   4 LlwlVGLALL-LTGCASEKGIIDKE-----GYQLDTRHRAQAAYPRIKVLVIHYT-AENFDVSLATLT--GRNVSSHYLI 74  Salmonella typhimur...
16121945   1 -------------------MYNIDY-------N--SFRSVKGFNRRVRFLVMHYT-AFNFKDSIDALT--GPSVSAHYLV 49  Yersinia pestis
16121975   3 KllsGGLLLL-LAGCSSSDHRNSNElidrgTYQIDTHYPSVAKNERVRFLVLHYT-AVGDAESLRLLT--QGEVSAHYLI 78  Yersinia pestis
15800625   4 VfwlIAVALL-LAGCAGEKGIVEKE-----GYQLDTRRQAQAAYPRIKVLVIHYT-ADDFDSSLATLT--DKQVSSHYLV 74  Escherichia coli O1...
17546515  99 PDAAngg------erfRIYSLAPESRRAWHAGVSYWQGERMLNASSVGIEVVNLGFPAQDgnaplmnrrwYPYPDAQIAV 172 Ralstonia solanacearum
15830207  75 PAVPpryn-----gkpRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIELENRGWQKSAgvk-----yfAPFEPAQIQA 144 Escherichia coli O1...
7388492    1 -----------------MDGSVGTGRQVGEIGA----HVKGHNQNSVGICLVG-GITASGkn-------hGEYTEAQWQS 51  Haemophilus influenzae
15596004  50 PAPHdpsykaagfkgqRIFNLVAEEDRAWHAGVSGWARRDNLNDTSIGIEIVNLARDDDGvf------tfPDYERSQINA 123 Pseudomonas aerugin...
15892420  64 DKDGt-----------QKEYHNDLTDQAFYAGKSSWKGEVGVNKFGIGVMLIN-DAKS-------------DFPAEQIGK 118 Rickettsia conorii
15893281  49 NNENp----------eHIFQLVEERDRAWHAGVSYWQGHERINDTSIGIEIVNPAFEVNAknnd---ivwLPYSERQINS 115 Rickettsia conorii
16764293  75 PATPplyg-----gkpRIWQLVPEQDQAWHAGVSFWRGATRLNDTSIGIELENRGWRMSGgvk-----sfAPFESAQIQA 144 Salmonella typhimur...
16121945  50 PDPTeqtyidagfkdmRIFNLVDENERAWHAGVSYWDGRNNLNDTAIGIETVNLATDNDGvf------tfPPYNVTQIAA 123 Yersinia pestis
16121975  79 PTHPkkag-----gkaIALQLVPEAQRAWHAGVSSWQGRNNLNDTSIGIEIVNLGFTEKMlgr-----twYPYNESQIEL 148 Yersinia pestis
15800625  75 PAVPpryn-----gkpRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIELENRGWQKSAgvk-----yfAPFEPAQIQA 144 Escherichia coli O1...
17546515 173 VGRLAADIVARH-AI-LPRKVVGHADIAPG----RKLDPGPLFPWKTLYEQFGIGAWP-EAEAIHYYQSHQPf--rGNVA 243 Ralstonia solanacearum
15830207 145 LIPLAKDIIARY-HI-KPENVVAHADIAPQ----RKDDPGPLFPWQQLAQQ-GIGAWPdAQRVNFYLAGRAPht-pVDTA 216 Escherichia coli O1...
7388492   52 LYKLLQELEAEH----PKALICGHRDLSPDl---NGDGVITPKEWLKDCPCFDVWSWLdSEQVVNLDHLYKE-------- 116 Haemophilus influenzae
15596004 124 LKQLAKNILQRYpDM-TPKNVVGHSDIAVG----RKSDPGPKLPWKELYEA-GIGAWYdDATRDRYREGFERdg-lPPRA 196 Pseudomonas aerugin...
15892420 119 LKEFLKDVTERYpNLdLKHDLVGLGEVTVNregnAHIAPGSKFPWKELAEA-GFGRYFeTTQEQKSKLLLSLdstgEKVN 197 Rickettsia conorii
15893281 116 VISLCKQIIARY-DI-KPTRVVGHSDIAPG----RKQDPGPLFPWKLLYDN-DIGAWYdEQVFNDLLPQVDI----TDIA 184 Rickettsia conorii
16764293 145 LIPLAKDIIARY-NI-KPQNVVAHADIAPQ----RKDDPGPRFPWRELAAQ-GISAWPdAQRVAFYLAGRAPyt-pVDTA 216 Salmonella typhimur...
16121945 124 IKALASNILYRFpDI-TPVNVVGHSDIAPG----RKSDPGAAFPWKALYDA-GIGAWYdDETKQRYLDQFLCs--lPSKN 195 Yersinia pestis
16121975 149 IEQLTKDIVQRY-NI-SPSDVVAHSDIAPL----RKSDPGPLFPWKRLAEK-GVGAWPdDATVAKYIGGRDKkg-aASVA 220 Yersinia pestis
15800625 145 LIPLAKDIIARY-HI-KPENVVAHADIAPQ----RKDDPGPLFPWQQLAQQ-GIGAWPdAQRVNFYLAGRAPht-pVDTA 216 Escherichia coli O1...
17546515 244 ELQAKLLAYGYDTPQtGVLDTQTINVVAAFQMHFRPDRYDGAPDIETAAILDALLEK 300 Ralstonia solanacearum
15830207 217 SLLELLARYGYDVKP-DMTPREQRRVIMAFQMHFRPTLYNGEADAETQAIAEALLEK 272 Escherichia coli O157:H7
7388492      ---------------------------------------------------------     Haemophilus influenzae
15596004 197 DLLEAFRLYGYALPA-TVDDAYFASLLRAFQMHFRPENYDGALDVETAAILYALNEK 252 Pseudomonas aeruginosa PA01
15892420 198 TLQENLKEYGYGVEStSTFDQFTQQAVRVFNDRYGTGLPNEEPPVSWTEAGQDVLSQ 254 Rickettsia conorii
15893281 185 VIQQKFITYGYKLEVtEILDSKMKDIIISFQMHFRPSNFSGDLDAETIAILDALILK 241 Rickettsia conorii
16764293 217 TVLALLSRYGYEVKA-DMTAREQQRVIMAFQMHFRPAQWNGIADAETQAIAEALLEK 272 Salmonella typhimurium LT2
16121945 196 DIISKLKRYGYDTSG-AVSEVGYNQLIRAFQLHFRPCNYDGIPDAETVAILYALVDK 251 Yersinia pestis
16121975 221 VIQQALAAYGYKIPQnGQLDTETRQVIKAFQMHFRPQDFSGVPDVETEAIALALVEK 277 Yersinia pestis
15800625 217 SLLELLARYGYDVKP-DMTPREQRRVIMAFQMHFRPTLYNGEADAETQAIAEALLEK 272 Escherichia coli O157:H7 EDL933
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