Conserved Protein Domain Family
RnaI

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COG3719: RnaI (this model, PSSM-Id:226242 is obsolete and has been replaced by 442933)
Ribonuclease I [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 226242
Aligned: 12 rows
Threshold Bit Score: 274.733
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
13471593  14 TQAIKNGKNpgNVSTEAGQSYQLLAGNKdapthYLILVPRADPERRWVKvtcghls---gssaatvPaaPGGQGkpAASG 90  Mesorhizobium loti
15888470   2 VQFPGNMHGmkRYAGFIALGLLSLAALW-----FAQEKPVSKGPENDRQtpaqqqsaarpqqntarQnaDNAQPp-RGTG 75  Agrobacterium tumef...
17987530   1 ----------------MAAARAILLATG-----FSAAIGFSPAKADDR---------------------DGGRP---GD- 34  Brucella melitensis
16124286   1 MESPMKTVPaaILAAALALTAAAAEASSl----QACAVPKAVTPAPTEIp-------------------PPDEIh-PNVP 56  Caulobacter crescen...
15829904   1 -----------------MKAFWRNAALL-----AVSLLPFSSANAVAL------------------Q---AKQY---GD- 33  Escherichia coli O1...
1175259   38 EQTKQTKVSepKFEPKFEPKFEPKFEPQ-----FETKRTDIEKSAVKNPdvfan-------ydvimRndHIGQN--AKAP 103 Haemophilus influenzae
15603724   2 NEKKTLQLS--IFVVCFLMFLLSGWY-------FFSKQKQAVEIIVDRnyd------------yimKndPIGQN--ANAP 58  Pasteurella multocida
15964928   2 LEYKKLKRIsrIRSNATRFWLLPAIVVLgtlvgCGGEDGSQTAPNPSKDl---------------aRsaSIAPAp-VGTG 65  Sinorhizobium meliloti
15965955   1 ------------MKTRAMMHLMRLAAVAl----GLANAPLAAAQESSAS---------------------EGET---GGG 40  Sinorhizobium meliloti
16763994   1 -----------------MNTIWHYSPLL-----AALLTPIFAANADEL------------------Q---AQQY---GD- 33  Salmonella typhimur...
15800326   1 -----------------MKAFWRNAALL-----AVSLLPFSSANAVAL------------------Q---AKQY---GD- 33  Escherichia coli O1...
133166     1 -----------------MKAFWRNAALL-----AVSLLPFSSANALAL------------------Q---AKQY---GD- 33  Escherichia coli
13471593  91 KPEYVFALSWQPAFCETKSS------KTECRAQNPsEFDATNFTLHGLWPQPNGNFYCQvaASDKANDNp---AHWKDLP 161 Mesorhizobium loti
15888470  76 FDFYVLSLSWSPAFCASSE-------GSGNRQQCG-SDRRYGFVVHGLWPQNENG-------YPEFCQS----SEPERVP 136 Agrobacterium tumef...
17987530  35 FDFYVLSLSWSPSYCASQG-------PRANQQQCG-VRRPFGFVVHGLWPQNERG-------YPANCQVdnmrSRGSYVP 99  Brucella melitensis
16124286  57 IAAYLLALYWSPEACRAGIP------ESDKAIQCE--ANRFGFTVHGLWPNGPDR------VHPRYCRS----SPPMRVK 118 Caulobacter crescen...
15829904  34 FDRYVLALSWQTGFCQSQHDrnr-neRDECRLQTEtTNKADFLTVHGLWPGLPKSVAARgvDERRWMRFgcatRPIPNLP 112 Escherichia coli O1...
1175259  104 VDYYMLALSWSPGFCDIQREkygdqlPYSSQYQCG-NNRTFGWVVHGLWPQNANARAVS--DHPRFCKG-----DLPALP 175 Haemophilus influenzae
15603724  59 TDYYTFVLSWSPAFCEKQRNrygddlPNSLQYQCG-LTQQFGWVIHGLWPQNERARRVS--DQPRFCRG-----DLPMVP 130 Pasteurella multocida
15964928  66 FDFYVLSLSWSPTWCDAND-------PKGKSDQCE-TGSGHGLIVHGLWPQNENG-------YPEYCRT----RHSDRVP 126 Sinorhizobium meliloti
15965955  41 RTEYVLAVSWQPGFCETWPD------RKECIGQTAeRFDATNFSLHGLWPLKKSYCGVEadLKARDRKG-----DWLELP 109 Sinorhizobium meliloti
16763994  34 FTDYVLALSWQTGFCQSQHErrh-rePDECRLQKEpANKADFLTVHGLWPGLPKSIAARgvDQRRWQRFgcatRPIPNLP 112 Salmonella typhimur...
15800326  34 FDRYVLALSWQTGFCQSQHDrnr-neRDECRLQTEtTNKADFLTVHGLWPXLPKSVAARgvDERRWMRFgcatRPIPNLP 112 Escherichia coli O1...
133166    34 FDRYVLALSWQTGFCQSQHDrnr-neRDECRLQTEtTNKADFLTVHGLWPGLPKSVAARgvDERRWMRFgcatRPIPNLP 112 Escherichia coli
13471593 162 PVNLDagt-----------rkELDQVMPGTAs--qLERHEWIKHGTCYGKSQQEYFSDALGLMRQVNASPVRDLFAKtiG 228 Mesorhizobium loti
15888470 137 DAIGR----------------SMFDIMPSMG----LIGHQWRKHGACSGLSQKDYFAATRAAFDAIRLPGKISSGAQ--T 194 Agrobacterium tumef...
17987530 100 RRIIS----------------SLSDIIPSAG----LIAHQWRKHSSCSGLPQNDYFATVRNAFEKVNIPPSLRNLAT--E 157 Brucella melitensis
16124286 119 TVKAN------------------LCMTPSPW----LLQHEWQAHGTCNWKTPEAYFKKTRQIRERLDVPDLDPGADG--- 173 Caulobacter crescen...
15829904 113 EARASrmcsspetglsletaaKLSEVMPGAGgrscLERYEYAKHGACFGFDPDAYFGTMVRLNQEIKESEAGKFLADnyG 192 Escherichia coli O1...
1175259  176 KGLLA----------------QYLAISPGEK----LLQGEWEKHGSCAFDSAQQYFAKEQELFNALKLP----------N 225 Haemophilus influenzae
15603724 131 QEIIE----------------QYLPESPSAS----LLQGEWEKHGACAFDDAKAYFDKQRELYRTLKLP----------N 180 Pasteurella multocida
15964928 127 ESLGR----------------QYFDLIPSMG----LIGHQWRKHGTCSGLSQRDYFAVTRAAHERLTIPPELTTADG--A 184 Sinorhizobium meliloti
15965955 110 EVDMGdet-----------akRLLVAMPGVKs--gLDRHQWLRNGTCQTANAEDYFALQLRLLDELNRSAVRALFADaiG 176 Sinorhizobium meliloti
16763994 113 EVKASrkcsasapglspdiaaALKEVMPGAGgnscLERYEYAKHGACFGFDPNAYFGTMIRLDKAIKDSALGQFLTDnyG 192 Salmonella typhimur...
15800326 113 EARASrmcsspetglsletaaKLSEVMPGAGgrscLERYEYAKHGACFGFDPDAYFGTMVRLNQEIKESEAGKFLADnyG 192 Escherichia coli O1...
133166   113 EARASrmcsspetglsletaaKLSEVMPGAGgrscLERYEYAKHGACFGFDPDAYFGTMVRLNQEIKESEAGKFLADnyG 192 Escherichia coli
13471593 229 GKLTADQIRGAFDTAFGAGAGDRVRVSCVIDpsngrrLIGELTLGLAGPIGPNASLKDLllasVPTNKAGCPIGTVDAIG 308 Mesorhizobium loti
15888470 195 NTLSADAIETAFTDANPGLSKRAVSISCDGR------RLEEVRICLNKDMAFRDC--------PELDRKGCRASATEIIP 260 Agrobacterium tumef...
17987530 158 RRVDPLLVEKAFIAANPGMKPDGISIACKRN------YLQEVRICMTRDLQYRSC--------DEVDANACRSRSVIMPA 223 Brucella melitensis
16124286 174 -TMTAGEIRQAFIARNPGVPAQGLNVRIKQG------RLTEVWVCMDLKFKWAACRGGN----GPADAVVAAVTPRASPG 242 Caulobacter crescen...
15829904 193 KTVSRRDFDAAFAKSWGKENVKAVKLTCQGNp----aYLTEIQVSIKADAINAPLSANSf--lPQPHPGNCGKTFVIDKA 266 Escherichia coli O1...
1175259  226 QKLSRDELFGWMKQHNPQLKNAYLRASRN-----------ELFICYDKKWQVMNC--------QSK-------------- 272 Haemophilus influenzae
15603724 181 YELSRNELFQWLRKNNKHLKEAYLGASRN-----------ELFICYDLKWQVIDC--------PRSRTGY---------- 231 Pasteurella multocida
15964928 185 ESLSVQAIEAAFEKKNSGMTSESIAVTCEGR------LLEEIRICFDKELKFRAC--------PQVDRQACRRDTVSLPP 250 Sinorhizobium meliloti
15965955 177 KELDEKQIKQAFDQGFGAGAGDRVRMRCQSVng--rdVITGLTIGLSGDLSGKAELADLiq-aAGPTEFKCAKGIADAAG 253 Sinorhizobium meliloti
16763994 193 KTVSRAEFDSVVAQMWGQDNVKAVKVNCHGNp----aYLTEIQFSLKASMINAPLSSASf--lPQPHPGNCGKQFIIDKA 266 Salmonella typhimur...
15800326 193 KTVSRRDFDAAFAKSWGKENVKAVKLTCQGNp----aYLTEIQVSIKADAINAPLSANSf--lPQPHPGNCGKTFVIDKA 266 Escherichia coli O1...
133166   193 KTVSRRDFDAAFAKSWGKENVKAVKLTCQGNp----aYLTEIQISIKADAINAPLSANSf--lPQPHPGNCGKTFVIDKA 266 Escherichia coli
13471593 309 FQ 310 Mesorhizobium loti
15888470 261 IR 262 Agrobacterium tumefaciens str. C58 (Cereon)
17987530 224 MQ 225 Brucella melitensis
16124286 243 QQ 244 Caulobacter crescentus CB15
15829904 267 GY 268 Escherichia coli O157:H7
1175259      --     Haemophilus influenzae
15603724     --     Pasteurella multocida
15964928 251 AP 252 Sinorhizobium meliloti
15965955 254 RG 255 Sinorhizobium meliloti
16763994 267 GY 268 Salmonella typhimurium LT2
15800326 267 GY 268 Escherichia coli O157:H7 EDL933
133166   267 GY 268 Escherichia coli
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