Conserved Protein Domain Family
COG5296

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COG5296: COG5296 
Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
Statistics
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PSSM-Id: 227615
Aligned: 3 rows
Threshold Bit Score: 637.469
Created: 7-Oct-2002
Updated: 23-Jan-2015
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
19112299   1 MADFQDELLALAGIDDSD------VASNRKRAHDDLDDVLSS-----SSDEDNNENVgqDYAEESGGEGNEKSEdefEEK 69  fission yeast
19073957     --------------------------------------------------------------------------------     Encephalitozoon cun...
2506764    1 MSDLDEDLLALAGADESEeedqvlTTTSAKRAKNNDQSLSKKrrievGSVEDDDEED--DYNPYSVGNADYGSE---EEE 75  baker's yeast
19112299  70 FKNPYRLEGKFKDEADRAKIMAMTEIERESILFEREEEISKLMERRELAIR----LHQQNAQYMAQS---TRRSTRDKPL 142 fission yeast
19073957   1 -------------------------------------------------------MEGRHRSSGCTD---FDREELYE-- 20  Encephalitozoon cun...
2506764   76 EANPFPLEGKYKDESDREHLESLPEMERETLLFERSQIMQKYQERKLFRARgrdmKEQQQRAKNDEDsrkTRASTRSTHA 155 baker's yeast
19112299 143 TSAAAGKRDKLTELKKRRqERSARSVS--ER--TRKRSPVSDYEEQNESEKSEEEEgYSPS------YAEEKVEQVSKDN 212 fission yeast
19073957  21 S---EEDKKMLLEMPETK--REEILYK---R--HIELQRFKEKKELEERMQGLQKK--TPS---------EAKEDISRTD 79  Encephalitozoon cun...
2506764  156 TGHSDIKASKLSQLKKQR-ARKNRHYSdnEDedDEEDYREEDYKDDEGSEYGDDEE-YNPFdrrdtyDKREEVEWAEEED 233 baker's yeast
19112299 213 ASAN---LYDLNAIRLGRKHVAEYMYHPIFESTVTGCFVRVKIG--ERDGQGVYRLCQVKGILESRKPYRVDGVLTKVSL 287 fission yeast
19073957  80 DFAE------FSQCIVSRDMIARNVFKP-FFDEFIGHFTRARIN----GLYLVVKIVGVGKGSTYSLWMGRKEVKTNRYL 148 Encephalitozoon cun...
2506764  234 EQDRepeISDFNKLRIGRSFVAKFCFYPGFEDAVKGCYGRVNVGtdKRTGKTSYRMVRIERVFL-QKPYNMGKFYTNQYF 312 baker's yeast
19112299 288 ECFHG-RSKRVFDVNVLSNEPFSDHDFQRWHHQMMEDKLSMPSKNFVQRKLNDLRDMSKYVLSEKEVSDIINRKKELSRV 366 fission yeast
19073957 149 DVSTGtRTYKGFRIENISNSPLLREEYEDVWRSFKVG-----SIAKVKEDYDKLVKTMGRRLSDEEISKMVACKDEVHPK 223 Encephalitozoon cun...
2506764  313 GVTQG-KDRKVFQMNYFSDGLFAEDEYQRYLRALDNSQMIKPSLHSLSNKTKEVMDFVNTPLTDKTTDEVVRHRMQFNKK 391 baker's yeast
19112299 367 PS--NIAAEKTRLRQRRQAAYVAGNAELVKEIDDQLNTLEELS--MGSNQ-NSNSAMDQLAKVNERNRRRNHTEIRLAEQ 441 fission yeast
19073957 224 RR--NVIHFKIELIQKRDRAIELKDKKAAMEYQRMIEEIEDNE--GARVH-NVNGGRPL--------------------- 277 Encephalitozoon cun...
2506764  392 LSgtNAVLEKTVLREKLQYAKETNNEKDIAKYSAQLRNFEKRMsvYEKHHeNDQSDIKKLGELTSKNRKLNMSNIRNAEH 471 baker's yeast
19112299 442 RMNEErrrlsaAATATPMSAPTSVLTgtspQPSPSLSTSIMstPKLNPSESVVVASEKASSPDLSPKLLPSEsqifdegI 521 fission yeast
19073957     --------------------------------------------------------------------------------     Encephalitozoon cun...
2506764  472 VKKED------SNNFDSKSDPFSRLK----TRTKVYYQEIQ--KEENAKAKEIAQQEKLQEDKDAKDKREKE-------L 532 baker's yeast
19112299 522 AVTQTPntledkdfklhekAVHGIDDIIATVDFGIDINI 560 fission yeast
19073957     ---------------------------------------     Encephalitozoon cuniculi
2506764  533 LVAQFR-------------RLGGLERMVGELDIKFDLKF 558 baker's yeast
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