Conserved Protein Domain Family
RfaE_like

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cd01172: RfaE_like 
RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Statistics
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PSSM-Id: 238577
Aligned: 36 rows
Threshold Bit Score: 248.244
Created: 10-Jan-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative riboseputative ADP
Feature 1:putative ribose interaction site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             # #                                ##  #                   # #            
O25529        3 KILVIGDLIADYYLWGKSERLSPEAPVPVLevqr--eskNLGGAANVANNLISLKa-KVFLCGVVGDDLEgehFISALKA 79  Helicobacter pylori
AAG02371     16 RVLVIGDVILDTYVWGATSGLCRESPVPAVtlts--vahQCGGAANVAVNLRALGa-EPVLLSATGDDRAgrrLREALRA 92  Streptomyces ver...
AAM24027     24 KIAVIGDVALDIYWRADMRKSELSRETPHFplpiveewmSPGAAGNVATNIAALKpeKLFLLSIIGKDWRgdlFIKEVEK 103 Thermoanaerobact...
NP_772062   207 HVVLVGDTIIDEYQYVTALGKASKENIVATllkn--geqFAGGVIAAANHVASFCk-SVEIVTTLGGNDYpeeFIRAHVR 283 Bradyrhizobium j...
AAO90222    195 RVHVVGDTIIDGFNYTSMIGGQTKTPTISVrhes--qkdYVGGAAIVAQHLRAAGa-QVTFTTLLGADDRkdfTLNVLSK 271 Coxiella burneti...
AAQ00366    188 RLIVIGDSIVDQYTACEPLGMSAEAPVIVVkeme--qknFIGGAAIVASHIASLGa-KCDFLSVIGKDDSgqwLQKKLEE 264 Prochlorococcus ...
CAE29361    181 RVLVLGDLIVDEYIACDPLGLSQEDPTIVVtpvl--relFVGGAGIVAGHAAGMGa-QVALLTVGGGDAMadfARERLAS 257 Rhodopseudomonas...
ZP_00175473 197 RVLVLGDVIIDEFNHCSVQGLTSKGRVISTlfkk--keqHLGGSLAIARHIASFAd-SVTVAGVVGTEPDihsLILNNLD 273 Crocosphaera wat...
ZP_00207812 205 KILMVGDTIIDEYNYVEGMERSSKEQLVATlfks--revFAGGIIATANHVADLVr-EVEVVTVLGEDDTwedLVRASVK 281 Magnetospirillum...
ZP_00291440 195 KVLVVGEAIIDEYCYTTPMGTIGKGGNIIAtryn-dkeiFAGGSLAIANHLSGFVk-EVALLTGIGPNCPhepFMRQQLQ 272 Magnetococcus sp...
Feature 1                                                                                       
O25529       80 RGIDasgilidKTRCTTLKTRIIAQn------QQIARVDKeikdplnadlrk--klldfftekiqEIDGVILSDYNKGVL 151 Helicobacter pylori
AAG02371     93 RDVDtgglfvqPGRTTVTKRRVMADg------QMLLRLDEggehplpvatdtgsrlleraagllpAVDAVIVSDYGYGVW 166 Streptomyces ver...
AAM24027    104 RGIItdflirsDERVTNAYCKPLKRgfs-dveYEDPRIDFenfrlitqkeed--elikllekvakEIDVLCVVDQMRFGC 180 Thermoanaerobact...
NP_772062   284 PNVTltp-irvQGRPTTRKLRYVELgy----lHKLFEVYTmddtpldetert--eidritaervrGGDVVIVTDFGHGMI 356 Bradyrhizobium j...
AAO90222    272 NEIKvna-iidENRPTTYKNAIIADg------YRLIKVDTldnssinddcl----aqfekaidntDCDVVICSDFRHGIF 340 Coxiella burneti...
AAQ00366    265 QSVNtyl-iedSTRPTTFKKRYVVEn------QKLFRVSRlddhhinrnctd--kiikklwalapKANGIVVSDFVYGVI 335 Prochlorococcus ...
CAE29361    258 YNVDati-ltdESRPTTTKQRFRAGn------KTLLRVSHlkqhdvdadlqt--rmletiehrlpSTDLVVFSDFNYGCL 328 Rhodopseudomonas...
ZP_00175473 274 GRIRldl-lyeEDYPTIIKRRYIERqgirndyNKLFSINYlreeglsrnerq--klwdrldntinSYDLVLVADYGHGLI 350 Crocosphaera wat...
ZP_00207812 282 PNVKlti-lyrPEAPTTRKTRFIEPty----vRKLFEVYHmddrpyaadvve--rldsvlaerlpEADVVVVTDFGHGML 354 Magnetospirillum...
ZP_00291440 273 ENVHphf-fhyEEAPTLVKRRYVDEt------AKLFEIYYydpsplteevdq--glcawirqhapDYDLVVVPDYGNGFI 343 Magnetococcus sp...
Feature 1                                                                                       
O25529      152 df-elTQAMIALANqhhkLILCDPKGkdy----skYSHASLITPNRTELEhalhlk-----ldshanLSKALQILKEtyh 221 Helicobacter pylori
AAG02371    167 ep-dtVARLAAHRElgpsTLVVDSRRpar----ftALRASAVKPNHAEALrlldagepppgparadwAAALGDRLLRltg 241 Streptomyces ver...
AAM24027    181 itprvREKIENFSReg-lTVIVDSREri------gYFTDVILKPNDIEMFkamgiek----dpqklsIEELLEFAEKfsi 249 Thermoanaerobact...
NP_772062   357 ap-stIDTLIANSRflaiNAQSNSGNhgyn-litkYPRADYICIDAPEARlaatd--------kfndIASVIENGLHrki 426 Bradyrhizobium j...
AAO90222    341 nr-rtIDRLLSVIPpq-vFKVADSQVasrwgniteFRNFDLITPNEREARfalad--------qdsgIRPLASKLYDian 410 Coxiella burneti...
AAQ00366    336 tp-qiLKEIHKVAKahdlKLFGDLQCssqvgdiskMKNFTLLCPNEREARvslqd--------kqsgLDAVCQKLMSetr 406 Prochlorococcus ...
CAE29361    329 pt-rlVEAIGQACRargvPMVADSQSssqvgdisrFAEMLLIKPTEREARlamrd--------fdsgLVVLVEALREkar 399 Rhodopseudomonas...
ZP_00175473 351 de-siMELLQSQAPflaiNCQTNSANhgyn-litkYKRADSFCLDEQEIRlafss--------rhgdHGHLLQKLHRhln 420 Crocosphaera wat...
ZP_00207812 355 tp-stINLLQERSKfltvNTQTNAGNlgfn-fatkYRRADYLCIDHREARfttad-------kysdvAVLVGEKIPAlid 425 Magnetospirillum...
ZP_00291440 344 sp-amVDALCDAAPylavNTQINSGNrgyh-visrYRRADFVSLNEPEVRlaahn--------rrdpLETVALQIGHqvh 413 Magnetococcus sp...
Feature 1                                                     # ##                              
O25529      222 --iaMPLVTLSEQGIAFLe------KGELVNCPTIA---KEVYDVTGAGDTVIASLTLSLLESmsLKDACEFANAAAAVV 290 Helicobacter pylori
AAG02371    242 --aeRVALTLDADGSLLFe-----rDRPPVRTFARGs-rAPVTAAVGAGDAFTAALTLALAAGadSAVAAELASAAAGTA 313 Streptomyces ver...
AAM24027    250 qkrsDVCVTLGARGAIYVek----dTSKKYYVPTVNl--TPPLDVCGAGDTFLSIFSLVLGTGgkKVEAVFMGNLAASVV 323 Thermoanaerobact...
NP_772062   427 -dcnNMIITHGSFGCYPFs-----sKTGVARVPAFT---KTVVDTVGAGDAFLTITAPLVAAGgnIEDVAFIGNAAGAIK 497 Bradyrhizobium j...
AAO90222    411 --ckTLILKLGEKGILTYyd---sdHEALDSFFVVSsfvDRVVDCVGAGDALLAYATLALVKGasPVIASILGAVAAACE 485 Coxiella burneti...
AAQ00366    407 --skNMIMKLGADGFIAYskn-kngSLRIQAFPALS---VNPVDVTGAGDSLLAIMAAGMCSDrpLMEVAALSCCGASLV 480 Prochlorococcus ...
CAE29361    400 --akNVILTLAAEGLLVHaetgsagTVVTDRLPAFN---TAPKDAAGAGDSFFVCAALALAIGtdIWRSAYLASIAAACQ 474 Rhodopseudomonas...
ZP_00175473 421 --aeQGWLTLGSSGSLGIn-----aQGEEELTPALT---LQVKDTTGAGDAFLALASMSAKLElpIAIGSLLGNLAGAMS 490 Crocosphaera wat...
ZP_00207812 426 --ceKLIVTSGFHGCLSYe-----rGGSVQRVPAFT---KQVVDTVGAGDALLAVTAPLVAAGcpMHQVGFVGNAAGAIK 495 Magnetospirillum...
ZP_00291440 414 --akQMSITMGTNGAMMLdi----eQDQAMRIPALA---TQVVDIIGAGDAFLTLAALAARAGlaTELGAFLGSTAAALD 484 Magnetococcus sp...
Feature 1                       
O25529      291 VGKMGSALASLEEIAL 306 Helicobacter pylori
AAG02371    314 VATPGTSTWHADELRR 329 Streptomyces verticillus
AAM24027    324 VKKIGTTGVATVEEIM 339 Thermoanaerobacter tengcongensis MB4
NP_772062   498 VGIVGHRNSVEKAPLV 513 Bradyrhizobium japonicum USDA 110
AAO90222    486 CEMEGNQPVTPDNVRE 501 Coxiella burnetii RSA 493
AAQ00366    481 VESMGNQPVTLECITQ 496 Prochlorococcus marinus subsp. marinus str. CCMP1375
CAE29361    475 VGRIGNIPVTARDIIR 490 Rhodopseudomonas palustris CGA009
ZP_00175473 491 ANILGNAYPIEKSKLL 506 Crocosphaera watsonii WH 8501
ZP_00207812 496 VGIIGHRSSVDKVALM 511 Magnetospirillum magnetotacticum
ZP_00291440 485 LQIVCNRSFVTPEALL 500 Magnetococcus sp. MC-1

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