Conserved Protein Domain Family
Met_dep_hydrolase_B

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cd01307: Met_dep_hydrolase_B 
Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Statistics
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PSSM-Id: 238632
Aligned: 9 rows
Threshold Bit Score: 464.109
Created: 10-Jan-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
active site
Feature 1:active site [active site]
Evidence:
  • Comment:active site is based on homology to other members of the amidohydrolase family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                               # #                                     
NP_458850    25 KLRIINDIIVDADkypvtse--triihadGMIVTPGLIDYHTHVFYDat-egGVRPDMYMPPNGVTTVVDAGSAGTANFd 101 Salmonella enter...
NP_105318   193 DVAIANGRVAAIDadipadra-eqivdatGCIVAPGLVDLHSHVYWGgt-slGVDADRLAAKSGTTTFIDAGSAGAGNFl 270 Mesorhizobium loti
ZP_00034802  95 DVLVDNGVIAAIGanlasgaphaeqvdcsGKLVLPGLIDTHGHVYQYvtgrfGLNADQCGVQSGVTTIVDQGGPSCITIp 174 Burkholderia fun...
NP_769989    49 DVAIRGGKIAAVAadilptsa-kevvdvgGKLVLPGLIDTHAHVYQYvsgrfGMNPDMVGVHSGVTTLVDQGGPSCMTLp 127 Bradyrhizobium j...
NP_357339    66 ILIGGDGKIAAVGsalqapad-tqridakGAFISPGWVDLHVHIWHGgt-diSIRPSECGAERGVTTLVDAGSAGEANFh 143 Agrobacterium tu...
NP_658879    19 DIVIENNKIAQVTkagageg--gkvldysGTYVSSGWIDLHVHAFPEfd-pyGDEVDEIGVKQGVTTIVDAGSCGADRIa 95  Bacillus anthrac...
NP_458862    18 NIALQDGKIAALGdvdgpal--ktidlrgECYVSAGWIDSHVHCYPKsp-iyHDEPDSVGIATGVTTVVDAGSTGADDId 94  Salmonella enter...
NP_784068    18 AVLITDGVIAEVGteltvpvg-cptldaqGCYITAGWIDDHTHCNAHaa-lyYDDADAIGYRTGVTTVIDAGSTGADNVa 95  Lactobacillus pl...
ZP_00037438  18 EVAIEKGMIKAVAaeinqpaq-evvdlegKYYLSAGWIDDHVHCYEKmn-lyYDYPDQIGVEKGVTTVIDAGTTGAENIr 95  Enterococcus fae...
Feature 1                                                                                       
NP_458850   102 afyrTVICASKVRIKAFLTVSPPGQiwsqenyd------pdnidenkIHALFRQYrNVLQGLKLKVqteDIAEYGLKPLT 175 Salmonella enter...
NP_105318   271 gfrrHVMERSRVRILAYVNISFAGIfgfsqsvsvgecgdlrlcepreVVAAAREHaDVVVGVKVRSgkhAGGTSGIAPVD 350 Mesorhizobium loti
ZP_00034802 175 gfrhYVVERSATRVLAYISAYLVGGleghyypdly---rpdcldadaTVKSIRANpDLVKGIKAHAeigGFARWGLDVMK 251 Burkholderia fun...
NP_769989   128 gfrhFIAEPSASRVYAFLSAYLVGGleghyypqly---spdgvdidaTVKAATANlDIVRGIKAHAeigGFARWGIRVIE 204 Bradyrhizobium j...
NP_357339   144 gfreYIIEPSRERIKAFLNLGSIGLvacnrvpelr---dikdidldrILECYAENsEHIVGLKVRAshvITGSWGVTPVK 220 Agrobacterium tu...
NP_658879    96 d-lvKSREQAKTNLFAFLNISRIGLkridelsn------mewidkekVIQAVEKYkDVIVGLKARMsksVVCDSGIEPLH 168 Bacillus anthrac...
NP_458862    95 d-fyTLTRDAATEVYALLNVSRVGLiaqnelan------manidadaVRQAVKRHpDFIVGLKARMsssVVGVNGITPLE 167 Salmonella enter...
NP_784068    96 d-lyQQAHRAATNVYALLNIARTGIvaqdelad------lnqlsfsaLRTAIKRYpDFIVGLKVRVsksVVGDNGVEPLR 168 Lactobacillus pl...
ZP_00037438  96 e-fyQLTKSVKTNVYALMNISKWGIvkqdelad------ltkiqedlVSTALAELpEFIVGIKARMsktVVGENGIKPLE 168 Enterococcus fae...
Feature 1                        #                                   #                          
NP_458850   176 ESLRIAnd--lrCPVAIHSThpvv-------------pmkELVSLLRRGDIIAHAFHGKGSTILtneg-avlaEVRHARE 239 Salmonella enter...
NP_105318   351 LALEAAdk--agLPLMAHIDeppp-------------grsEVLPRLRRGDILTHCFRPFPNAPVfasg-avrpNMRLARE 414 Mesorhizobium loti
ZP_00034802 252 IAAKIGra--aeLPLYIHFGqlwpkpesgglavqpdsifnQVVETLKPGDILAHPFSRHPGGFVeeng-klhpLVHEAVA 328 Burkholderia fun...
NP_769989   205 MAAEIGkr--adLPVYVHFGqlwglpesgangedadtiltRVIPLLREGDVLAHPFTRHPGGFVnreg-evhpVIQAALD 281 Bradyrhizobium j...
NP_357339   221 LGKKIAki--lkVPMMVHVGeppa-------------lydEVLEILGPGDVVTHCFNGKSGSSImede-dlfnLAERCAG 284 Agrobacterium tu...
NP_658879   169 IARDLSre--tsLPIMVHIGsapp-------------rieEVVPLLEKDDVITHYLNGKENNLFdeeg-kplpVLLDAVN 232 Bacillus anthrac...
NP_458862   168 RAKAMQqen-gnLPLMVHIGnnpp-------------dldEIAERLTAGDIITHCYNGKPNRILrpdg-elraSVTRALA 232 Salmonella enter...
NP_784068   169 VAKQYQadltvqLPLMVHIGsnpp-------------elaAIIALMRPGDVLTHCFNGKPNGIVnstg-evaqYVRKAYQ 234 Lactobacillus pl...
ZP_00037438 169 LAKKIQten-ndLPLMVHIGsapp-------------eleEVLSRMERGDVLTHCFNGKPNGILdpktdqiknFVWDAYN 234 Enterococcus fae...
Feature 1                                         #                                             
NP_458850   240 RGVIFDAANGrshFSMNTARRAIANGFlpDIISSDLStiTKLAWPVYALPWILSKy---------------------LAL 298 Salmonella enter...
NP_105318   415 RGVIFDLGHGmgsFDFDVARAMLAEGLapDVISSDVHl-YCVDGPAFDILVCMSKl---------------------MAL 472 Mesorhizobium loti
ZP_00034802 329 HGLKIDVGHGs-hFSFRTARVVLDEGVvpDTLGADMHg-YNTHVPAPAGTPDSHPdeehsflgrtq-fslvsamtsmLAL 405 Burkholderia fun...
NP_769989   282 RGLKVDVGHGs-hFSYRLAKKAIAAGIipTTLGADIHg-YNTHVPAPAGTPDEHEdeenhpfagqakfslvqamssmMAL 359 Bradyrhizobium j...
NP_357339   285 EGIRLDIGHGgasFSFKVAEAAIARGLlpFSISTDLHg-HSMNFPVWDLATTMSKl---------------------LSV 342 Agrobacterium tu...
NP_658879   233 RGVHLDVGHGnasFSFKVAEAAKRHDIafHTISTDIYrkNRVHGPVYSMAHVLSKf---------------------LYL 291 Bacillus anthrac...
NP_458862   233 RGVRLDVGHGtasLSFAVAKRAISLGIlpHTISSDIYcrNRINGPVHSLANVMSKf---------------------LAI 291 Salmonella enter...
NP_784068   235 KGLIFDVGHGtdsFSFRTAALARTAHLfpQTLSSDIYyrNRLNGPVYSLAVCVEKl---------------------LLL 293 Lactobacillus pl...
ZP_00037438 235 NGVVFDIGHGtdsFNFHVAETALKAGMkaTSISTDIYirNRTNGPVFDLATTLEKl---------------------RVV 293 Enterococcus fae...
Feature 1                                                                       
NP_458850   299 GVTLADVINAcTHTPAVLmgmaaeiGTLAPGAFADIAIFkLKNRHVEFADIHGETLTGTHVLVP 362 Salmonella enterica subsp. enter...
NP_105318   473 GMPLVEVLRAaTQAPARAiar-pdlGTLAVGTVGDVVVLrQRSGRFTFVDAVGASLVADQRLVS 535 Mesorhizobium loti
ZP_00034802 406 GLPLNHVVAMaTCNAAKMvgmedaiGTLQVGRGADISVLdDRRGRWVLEDNEGTQVITDRMLSP 469 Burkholderia fungorum
NP_769989   360 GLSLEQVVPMvTSNPAKMlgrsaeiGALKVGMDADVSVLsEKKGRFILKDNEQNEVIAERLLQP 423 Bradyrhizobium japonicum USDA 110
NP_357339   343 DMPFENVVEAvTRNPASVirl-dmeNRLDVGQRADFTVFdLVDADLEATDSNGDVSRLKRLFEP 405 Agrobacterium tumefaciens str. C...
NP_658879   292 GYPLEEVIDAvTKHAAEWlkk-pelGRIQEGDIANLTLFtVKDEKVKLIDSEGDQRIAERRIDT 354 Bacillus anthracis str. A2012
NP_458862   292 GMSLPQVIACvTANAADSlnl-ktkGRLQPGLDADLTLFtLKRQPTVLVDAENDSLQAEELLTP 354 Salmonella enterica subsp. enter...
NP_784068   294 GYRLEEIIPMiTTNPARIfkl-thkGQLCRGYDADLTIFqTVTAPQIVVDSTGEERIAPTQVIP 356 Lactobacillus plantarum WCFS1
ZP_00037438 294 GYSWEEIIEKvTAVPARNfhl-knkGQLAVNYDADLTIFeIVENEKELKDSNGFTRIAKEQILP 356 Enterococcus faecium

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