Conserved Protein Domain Family
ribokinase_group_B

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cd01945: ribokinase_group_B 
Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Statistics
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PSSM-Id: 238920
Aligned: 18 rows
Threshold Bit Score: 248.363
Created: 6-Sep-2004
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Conserved Features/SitesClick to see Conserved Features Help
 
substrateATP binding
Feature 1:substrate binding site [chemical binding site]
Evidence:
  • Comment:based on homology to other members of the family
  • Citation:PMID 9519409

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                               #                                       
NP_104618     6 RLLSVGALTLDTILrveTLPTHQGKfiaaDGVQIASGMATSAACAAHRLGaeVSLWAsaGDDLIGEQLiagieaeGVDCS 85  Mesorhizobium lo...
BAB53373      6 SILGFGAIAIDDIVy-vDQPLSAGKgrvrQSARAFGGNVATALAAVARLGgsAGFVGwlGTAADDPVLcdl-iesGVETA 83  Mesorhizobium loti
NP_488721     4 HALFVGLVTLDLIYlaeSAPQNNQKlvatDYTVAAGGPATNAAVTFSYLGnqATVLGvvGSHPMTQLIrsdltkyQVAIA 83  Nostoc sp. PCC 7120
AAM91140     50 IVLGCGGIAVDFLAtvdSYPQADDKirstSLKVQGGGNAANALTCAARLGlnSRLISkvANDSQGKGMleeleadGVDTS 129 thale cress
ZP_00019401   5 DAIGVGIASWDLVGvtaTSPVLGQKqplaGYTEMGGGPVATALATMARFGaqVALVSavGDDHYGMAIkaeltrfGVDTS 84  Chloroflexus aur...
NP_769473     2 QALFIGQTYIDVVFltdHMPTGDEKhvatDYAVSFGGNAVTAAFCCAKLGivPDLIAtaANDWLGRMFqdmcakyAISLH 81  Bradyrhizobium j...
NP_890611     9 AALFVGHAYIDVTLladEWPGGDDKrvarDYAVSFGGNAVTAAFACARLGlaPDLICpqAPDWLGHMFadmaashGVRVH 88  Bordetella bronc...
AAR34022      2 VVTGLGQCCWDTLAeveEYPSPDSKaesgQWVEQGGGPAATALVTVARLGlqCRFAGvvGDDAAGALIrhalhaeGIDVT 81  Geobacter sulfur...
BAD10340     46 VVLGCGAVSADYLAtvaSFPNPDDKirslTLKVQGGGNTGNALTAAARLGlrPRIISkvSNDPQGRNIlkelqddGVDTS 125 Japanese rice
NP_974877    14 IVLGCGQLCLDYLVtvaSFPIPDQKirgtSFKVQGGGNTGNALTCVARLGlpCRILAkvADDSHGRYMveelessGVDTS 93  thale cress
Feature 1                                                                                       
NP_104618    86 YVRRVSGArsalasi---lvdahgeRIIVPFYDSLAQADPETLPfad--------itaFDAVLVDVrwpdaAALALKAAR 154 Mesorhizobium lo...
BAB53373     84 FAPRHADArpvrs-------ritvgSDGERFIAYDDDAMLGTTPdfsdd-----ilnrAAVLIVDSya-irSMDVVTRAR 150 Mesorhizobium loti
NP_488721    84 DIDPTINTpppvssii--vtqatgeRAVISINAVKTQASEDSIPpdi--------lhnIDIVLIDGhqmtvGYVITQKAR 153 Nostoc sp. PCC 7120
AAM91140    130 FIVVSKEGnspft-------yilvdNQTKTRTCIHTPGDPPMLPtdlsqssmlsaldrASIVYFDVrlhetALVIAKEAS 202 thale cress
ZP_00019401  85 FVVTGRGSshiafvl----aepgsdRRTVWWYNEPTVFADLSFPael--------agqTRALLIDShl-paALSAARQVR 151 Chloroflexus aur...
NP_769473    82 ARKVNQSSlsfi----------mpkDGKRAIVRCRDDEHIHPFPiln--------lggCRALHIDGhqpdaAIHYAKVCR 143 Bradyrhizobium j...
NP_890611    89 PRPVRRSSlsfi----------mprDGKRAILRARDTDYLQSFPlle--------vggYRVLHLDGhqpdaALHYARACR 150 Bordetella bronc...
AAR34022     82 HLLTRPGAasqrafimvertggrrtIVWQRPTGAHLAPAELEEPfw----------sgSAFLHLDGlmeeaSLHGVREAR 151 Geobacter sulfur...
BAD10340    126 HILVAEEGnspft-------yiivdNQTKTRTCIHTPGYPPMVPeeltqenlfaaldgADIVYFDVrlhetALLVAEEAS 198 Japanese rice
NP_974877    94 FCMSAKDGashfnyv---ivdnqtnTRTCIYTPGYPPLLPDDLTeslll----dvldgVRVLYVNGrsreaELLLAQKAH 166 thale cress
Feature 1                                                                                       
NP_104618   155 AAGrp-------aiLDADTASlav-lerLLPLASHIVASEpavriicgqaldl-asactdmasrtdaFVAVTGGaaGIWW 225 Mesorhizobium lo...
BAB53373    151 DLGla-------ilGDIEWSGgpa-terLIGLCDHLILPLgfartatgcrlpa--emlealwspsrsAVVLTDGgrGVYY 220 Mesorhizobium loti
NP_488721   154 ANNipvv----idgGSWKPGFe-----rILPLVDYAICSAnfyppncsssee----afaylhnlgipHIAITHGeqPIEY 220 Nostoc sp. PCC 7120
AAM91140    203 RKKi---------pILVDTEKkrdglddLLPFADYVVCPEnfpqtwtevsstpgalvsmllrlpklkFVIVTSGehGCLM 273 thale cress
ZP_00019401 152 AAGgr-------imIDAERVNptv--leLLPLCDDIVVSAnfaravtglsdiv--matqalaeryrtLVVVTAGeaGSWA 220 Chloroflexus aur...
NP_769473   144 EAGi---------lTSLDGGGlrtntheLLEFIDVAIVAErlceqmdltpek----mldylksrgckIGGVTMGekGLLW 210 Bradyrhizobium j...
NP_890611   151 AAGv---------lTSLDGGGlrsntaeLMRHIDVAVCAErlceqmglsaea----llewlrdcgcrIGAVTQGerGMLW 217 Bordetella bronc...
AAR34022    152 RRGi---------pVMVDAGRmrpgmreLAKLCDYLVAAEqffldlgwdgsee--qfarladglgapTVTVTLGdrGSLT 220 Geobacter sulfur...
BAD10340    199 QRKl---------pILIDAERkrdgldeLLNFASYVVCSAkfpqawtgasstpvalvsmllrlpnikFIIVTLGekGCLM 269 Japanese rice
NP_974877   167 SKNipilinaekkrTGLDELIdl----aDYAICSTNFPQEwtgapsspsal-----lsmlirlpklkFVIMTLGehGCVM 237 thale cress
Feature 1                                                                                 #  #  
NP_104618   226 Fdr-------------------------------------------------kaGSSRHvaap---rikAVDTLAAGDVF 253 Mesorhizobium lo...
BAB53373    221 Rgr-------------------------------------------------eeTRLWQlpph---rvaVVDSTGAGDCF 248 Mesorhizobium loti
NP_488721   221 Ls---------------------------------------------------cGEHGTvvvp---kitAVDTLGAGDIF 246 Nostoc sp. PCC 7120
AAM91140    274 VqraskaevfesqetdieslletlkhrkdstttfptcvssettklkangvgtmtGRLFLgtaekippeeLVDTTGAGDAF 353 thale cress
ZP_00019401 221 Ch---------------------------------------------------nGELIHtpaf---pttPVDTTGCGDVF 246 Chloroflexus aur...
NP_769473   211 Yne--------------------------------------------------tGAVEImpampiprerVIDTNGAGDVF 240 Bradyrhizobium j...
NP_890611   218 Yde--------------------------------------------------aGAVSRlpaldipasaVVDTSGAGDVF 247 Bordetella bronc...
AAR34022    221 Rh---------------------------------------------------dGTTCHvpaf---pvtTLDTTGAGDVF 246 Geobacter sulfur...
BAD10340    270 LersttdaseaeeidveslleslekkevlsssmpkciasksnlrisadgigsisGRLLLgtaeiipseeLIDTTGAGDAF 349 Japanese rice
NP_974877   238 Lercssevsgseeetdidelheslkq----stdftsvlpvcnsslvtrltgnvtGRLVIvtaekipsseLIDTTGAGDAF 313 thale cress
Feature 1                                                 
NP_104618   254 HGAFAVGLAEAMPv--eQALRFASAAAALKCLRFGGRLGAPD 293 Mesorhizobium loti MAFF303099
BAB53373    249 HGAYAHALTRGADt--aGRVAFAAAAAALSITGRGGREALPT 288 Mesorhizobium loti
NP_488721   247 HGAFCHYILQASFt---KALEGAAKIAADACKLFGTRRWMDV 285 Nostoc sp. PCC 7120
AAM91140    354 IGAVLYAICAGMPp--eKMLPFAAQVAGCSCRALGARTGLPH 393 thale cress
ZP_00019401 247 HGALLFALLRNDPl--pAALRFASAAAALKTRGLGGRTALPS 286 Chloroflexus aurantiacus
NP_769473   241 HGAYVYSYLAHPGkswrEHFDFARAASTFKIQRLGNEAGLPT 282 Bradyrhizobium japonicum USDA 110
NP_890611   248 HGAYVWSYAARPQlpwrEHFRFARAAAAYKIQHLGNEAGLPG 289 Bordetella bronchiseptica RB50
AAR34022    247 HGGYLFGLLKGWPl--rETVIFASAAAALSCLHLGAQRGAPR 286 Geobacter sulfurreducens PCA
BAD10340    350 IGAVLYGLCSGMPp--eKMLPFAAQVAACGCRGLGARTALPH 389 Japanese rice
NP_974877   314 TGALLYGLCTGMAl--eEMLTFASRVAACCCRGLGARTSLPY 353 thale cress

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