1GMY,1ITO,3PBH


Conserved Protein Domain Family
Peptidase_C1A_CathepsinB

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cd02620: Peptidase_C1A_CathepsinB 
Click on image for an interactive view with Cn3D
Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane antibody-mediated interstitial nephritis. It plays a role in renal tubulogenesis and is defective in hereditary tubulointerstitial disorders. TIN-Ag is exclusively expressed in kidney tissues.
Statistics
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PSSM-Id: 239111
Aligned: 49 rows
Threshold Bit Score: 255.658
Created: 16-Mar-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active siteS2 subsite
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:The catalytic residues of C1 family peptidases are Cys and His, forming a catalytic dyad. Two other residues play an important role in catalysis: a Gln preceding the catalytic Cys, believed to help in the formation of the oxyanion hole; and an Asn residue which orients the imidazolium ring of the catalytic His.
  • Citation:PMID 8439290
  • Citation:PMID 7470479
  • Citation:PMID 8416808
  • Structure:1GMY_A; human cathepsin B with bound dipeptidyl nitrile inhibitor; contacts at 3.5A
    View structure with Cn3D
  • Structure:3PBH; human procathepsin B; contacts at 3.5A between active site and inhibitor propeptide
    View structure with Cn3D
  • Citation:PMID 8617355

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                          #     #                                                    
1GMY_A      3 PASFDAREQWPQCptikeIRDQGSCGSCWAFGAVEAISDRICIHtna-hvSVEVSAEDLLTCCgsm-------cgDGCNG 74  human
AAO61484   77 PENFDARQQWGSKih--aIRDQQQCGSCWAFGATEAFSDRFAINg----kDVILSPEDLVSCDtn---------dYGCNG 141 Sterkiella histrio...
P92132     76 PESFDFREEYPHCip--eVVDQGGCGSCWAFSSVATFGDRRCVAgld-kkPVKYSPQYVVSCDhg---------dMACNG 143 Giardia intestinalis
EAL63141   89 PTSFDSRVQWPDCih--pILNQEQCGSCWAFSSSEVLSDRLCIAsnnktnPGALSPQTLVACDvy--------gnDGCSG 158 Dictyostelium disc...
EAA37074  141 PESYDFRDEYPHCit--eVVDQGNCGSCWAFSSVQTFADHRCRSgld-atGVSYSVQYVLDCDrk---------dHGCNG 208 Giardia lamblia AT...
P92131     80 PPQFDFRDEYPQCvk--pALDQGSCGSCWAFSAIGVFGDRRCAMgid-keAVSYSQQHLISCSle---------nFGCDG 147 Giardia intestinalis
EAA37893  105 PDAFDLREEYPQCit--pVYDQGYCGACWAFSATGAFGDRRCMQwld-pvGVPYSQQYTVSCDdl---------dLGCAG 172 Giardia lamblia AT...
EAA40365   82 PDRLDYRQTHPECff--ePEDQKECSCCYAFATLGALSTRRCIAkld-pqAVSLSVQHMVSCDsg---------eAGCQG 149 Giardia lamblia AT...
EAL61210   47 PASFDVRTNWGDCms--pVREQQSCGSCWAQVTSGILADRMCIEsdk-niKMLLSPQYLMDCDgscvsdgvsgcnNGCKG 123 Dictyostelium disc...
EAA39655   76 PDHFDFREEYPQCit--eVIDIGLCSSSWAYSAVDAFSHRRCLTgld-qeATRYSAQYILSCSs----------tNGCFG 142 Giardia lamblia AT...
Feature 1                                                                                     
1GMY_A     75 GYPAEAWNFwt--rKGLVSGglyeshvgCRPYSIPPcehhvngsrppctgeGDTPKCSKicepgysptykqDKHYGYNSY 152 human
AAO61484  142 GYMDVAWEYla--dHGAATDs-------CFPYSAGSgf-----------apACSDKCADgs--------amQRFKCAPNS 193 Sterkiella histrio...
P92132    144 GWLPNVWKFlt--kTGTTTDe-------CVPYKSGSttl----------rgTCPTKCADgssk-----vhlATATSYKDY 199 Giardia intestinalis
EAL63141  159 GIPQLAWEYme--lKGLPTDs-------CVPYTAGNgt-----------vySCQRSCSDsedys---lyraKPFTLKTCS 215 Dictyostelium disc...
EAA37074  209 GEPVNAFNFlh--nTGTVLAs-------CVGYTAGDdav----------vkFCPQKCDDgsa------venVVATSGSKS 263 Giardia lamblia AT...
P92131    148 GDFQPTWSFlt--fTGATTAe-------CVKYVDYGhtv----------asPCPAVCDDgs--------piQLYKAHGYG 200 Giardia intestinalis
EAA37893  173 GTSFNVWTFlt--eHGTTTLe-------CVRYTDADkdl----------ssPCPALCDDgse------iqlVKADGCLDY 227 Giardia lamblia AT...
EAA40365  150 GEFESSWAFle--tEGAVKSd-------CLPYTSGEtgk----------sgECPTTCQDgtpv-----esaFHYKAASAS 205 Giardia lamblia AT...
EAL61210  124 GFVGLALTRli--nEGIVSDe-------CLSYQASKd-------------sSCPTTCDDgspi-----sntTIYKATSCR 176 Dictyostelium disc...
EAA39655  143 FSTRESIAWdfiatTGIPLEs-------CVKYTDYDqtq----------srPCPSTCDDds--------flEVYKPDGYE 197 Giardia lamblia AT...
Feature 1                                                      #                      #       
1GMY_A    153 SVsns-ekdIMAEIYkNGPVEGAFSVYSDFLLYKSGVYQHv-tGEMMGGHAIRILGWGVe---NGTPYWLVANSWNTDWG 227 human
AAO61484  194 VRqskgvaqIQSEIVsHGPVEGAFTVYTDFFNYQSGVYTPt-tTDVAGGHAIKILGYGVe---NGTPYWLCANSWGPAWG 269 Sterkiella histrio...
P92132    200 GLdi---paMMKALStSGPLQVAFLVHSDFMYYESGVYQHt-yGYMEGGHAVEMVGYGTd--dDGVDYWIIKNSWGPDWG 273 Giardia intestinalis
EAL63141  216 SVq-----cIQENILaYGPIVGTMEVYEDFMSYSSGVYVMtpgSSLLGGHAIKIVGWGFdq-tSQLNYWIVANSWGADWG 289 Dictyostelium disc...
EAA37074  264 GSa------IDVLLA-HGPVVATFNVAQDFMYYKSGVYQHr-wGLWLGGHAVEIIGYGVt--dSGLDYWTVRNSWGPDWG 333 Giardia lamblia AT...
P92131    201 QVsks-vpaIMGMLVaGGPLQTMIVVYADLSYYESGVYKHtygTINLGFHALEIVGYGTt--dDGTDYWIIKNSWGPDWG 277 Giardia intestinalis
EAA37893  228 SGnv---taIMQTLAnDGPVQAVMSVYRDFLYYRGGVYKHv-yGIQISSHAVEIIGYGTtddeERIPYWIVKNSLGPNWG 303 Giardia lamblia AT...
EAA40365  206 RLsny--neIMVSLLaDGPVQTGFYVHEDFLYYVGGIYHKv-yGTSLGGHAVLIVGYGSm---NNHDYWIVRNSWGSDWG 279 Giardia lamblia AT...
EAL61210  177 AFptv--qdAQYEIMtNGPVIATFMLYSDFKPHKWDVYIKs-sNTQVESHAVRVVGWGTt--sDGVDYWIAANSWGTGWG 251 Dictyostelium disc...
EAA39655  198 GVgln-cerLKRAVAlRGPMQAMFTVYEDFTYYLEGIYSYt-yGNRVGFLSVEIVGYGTs--dEGQDYWIVKNYWGPGWG 273 Giardia lamblia AT...
Feature 1                            
1GMY_A    228 DNGFFKILRgqdhCGIESEVVAG 250 human
AAO61484  270 MSGFFKIKQg--eCGIEDQVFSC 290 Sterkiella histriomuscorum
P92132    274 EDGYFRMIRgindCSIEEQAYAG 296 Giardia intestinalis
EAL63141  290 QQGFFFISMe--tCSISSDASAA 310 Dictyostelium discoideum
EAA37074  334 EDGYFRIVRggdeCGIEHEGFHY 356 Giardia lamblia ATCC 50803
P92131    278 ENGYFRIVRgvneCRIEDEIYAV 300 Giardia intestinalis
EAA37893  304 EEGYFNIVRgsneCDIESAVYSG 326 Giardia lamblia ATCC 50803
EAA40365  280 ENGYFRILRgtneCGIEKNAWQV 302 Giardia lamblia ATCC 50803
EAL61210  252 DKGYFKIRRgsdeAAFEEGFITV 274 Dictyostelium discoideum
EAA39655  274 EDGYFRIVRgqneCQIENSAYGA 296 Giardia lamblia ATCC 50803

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