1SQC,1W6J,1W6K,2SQC


Conserved Protein Domain Family
SQCY_1

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cd02892: SQCY_1 
Click on image for an interactive view with Cn3D
Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Statistics
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PSSM-Id: 239222
Aligned: 45 rows
Threshold Bit Score: 640.013
Created: 16-Aug-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
catalytic acidActive site
Conserved site include 1 residue -Click on image for an interactive view with Cn3D
Feature 1:catalytic acid [active site]
Evidence:
  • Comment:The catalytic Asp protonates the first C=C double bond of squalene, resulting in a carbocation for the initiation of ring cyclization.
  • Comment:A water molecule acts as a base to receive a proton on the other end of the squalene molecule.
  • Citation:PMID 9931258
  • Comment:9295270

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                       
1SQC         15 LDRAVEYLLSCQKDeGYWWGPLLSNVTMEAEYVLLCHIldrv-drdrMEKIRRYLLHEQREDGTWalyp--ggppDLDTT 91  Alicyclobacillus...
EAA49134     22 LDHATEFARDTLVNkEHWCGWVLSNVTVTAEWIFLQYIlglemsnedRRGFLKHFTSSQRPDGSWslatqtttggELSCT 101 Magnaporthe gris...
YP_106607    17 VARATDALLAAQQAdGHWVYELEADSTIPAEYVLLVHYlgeapnvelEQKIARYLRRIQQPDGGWplft--dgapNISAS 94  Burkholderia mal...
YP_113312    28 IRQAKDRLLSLQHLeGYWVFELEADCTIPAEYILMMHFmdei-daalQAKIANYLRSHQSADGSYplfr--ggagDISCT 104 Methylococcus ca...
P33990       22 IQKATRALLEKQHQdGHWVFELEADATIPAEYILLKHYlgepqdleiEAKIGRYLRRIQGEHGGWslfy--ggdlDLSAT 99  Zymomonas mobilis
EAL84865     31 IKLSGQHSRGEMHSdGHWCGEVKTNATTSAEHVLLCQAlgin-ldadREAFISWFRCTQGADGGWstap--dqagDISVT 107 Aspergillus fumi...
ZP_00415757  28 IVRARAALLGRQGAdGHWCFELESDCTITAEYILMMHFtdei-dedlQERMARYLRATQVQETHGgwpqyvggaiDLSCT 106 Azotobacter vine...
ZP_00463675  20 IARGRDALVRLQQPdGSWCFELESDATITAEYILMMHFmdri-ddvrQEKMARYLRANQRLDTHGawdlyvdgapDVSCS 98  Burkholderia cen...
YP_192650    32 IEGAQAALGGKQKSdGHWVYELEADATIPAEYVLLEHYldri-dpekQAKIGVYLRRIQGHHGGWplyh--dggfDLSAT 108 Gluconobacter ox...
ZP_00271002  29 IGESCRWLGERQNQdGHWVFELEADATIPAEYILLNHFldei-ddarEARIASYLRAIQGKHGGWplfh--dgdfDMSAT 105 Rhodospirillum r...
Feature 1                                                                                       
1SQC         92 IEAYVALKYIGMSRDeePMQKALRFIQSQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGkrmPLNIYEFGSWAR 171 Alicyclobacillus...
EAA49134    102 IEAYLALKILGVSPEedYMVRARDYVRSHGGAEKMRMLSRFHLAMFGLIPWAAVPQMPPELIFMPswsLVNIYKFSSWAR 181 Magnaporthe gris...
YP_106607    95 VKAYFALKVIGDDENaeHMQRARRAIHAMGGAEMSNVFTRIQLALYGVVPWYAVPMMPVEIMLLPqwfPFHLSKVSYWAR 174 Burkholderia mal...
YP_113312   105 VKVYYALKLAGDSIDapHMKKAREWILAQGGAARSNVFTRIMLAMFEQIPWRGIPFIPVEIMLLPkwfPFHLDKVSYWSR 184 Methylococcus ca...
P33990      100 VKAYFALKMIGDSPDapHMLRARNEILARGGAMRANVFTRIQLALFGAMSWEHVPQMPVELMLMPewfPVHINKMAYWAR 179 Zymomonas mobilis
EAL84865    108 VEAYLALKILGLSEDdaAMRRARDFAIAAGGVAKVRIFTRIYLALFGLFPWAAVPELPPELILLPsrvPVSIYHWSAWAR 187 Aspergillus fumi...
ZP_00415757 107 VKAYYALKAAGDSPEapHMRRAREAVLALGGAAKSNVFTRILLAMFEQVPWRAVPYLPVEIMLLPrwaPIHIEKMSYWAR 186 Azotobacter vine...
ZP_00463675  99 VKAYFALKAAGDSEHapHMIRARDAILKLGGAARSNVFTRILLATFGQVPWRAAPFMPVEFVLFPkwvPISMYKVAYWAR 178 Burkholderia cen...
YP_192650   109 VKAYFALKAIGDDINapHMRIAREAILDHGGAARTNVFTRIQLALFGEVPWDATPVMPVELMLLPrkaFFSVWNMSYWSR 188 Gluconobacter ox...
ZP_00271002 106 VKAYYALKLTGDGVDepHMVRARQAILEHGGAERTNVFTRFTLAMFDQVPWRACPVTPVEALLLPrfaPFHWSKVSYWSR 185 Rhodospirillum r...
Feature 1                                                                                       
1SQC        172 ATVVALSIVMSRqpvf------plpeRARVPELYEtdvpprrrg--------akggggwiFDALDRALHGyqkl---svh 234 Alicyclobacillus...
EAA49134    182 CNIVGLCMLRVHeplyalp-ngkqldNDYLDELWLdpyhkaipytvp-ylqlmqtsplgvLFQLGDLFLWllsf--lgfw 257 Magnaporthe gris...
YP_106607   175 TVIVPLLVLNAKrpva------knprGVRIDELFKgapvstgllpk---qphqsagwfafFRAVDGVLRLvdgl---fpr 242 Burkholderia mal...
YP_113312   185 TVMVPLFILCSHkvta------rnpsRIHVRELFTvdpqkerhy--------fdhvktplGKAILALERFgrmleplipk 250 Methylococcus ca...
P33990      180 TVLVPLLVLQALkpva------rnrrGILVDELFVpdvlptlqe-------sgdpiwrrfFSALDKVLHKvepy---wpk 243 Zymomonas mobilis
EAL84865    188 ATVVPLLIISHHrpiyalpgggkgtsSDYLDELWCdpqnkmipynhdeptawrsdpfasiFTLADSILHRldgl--rsfn 265 Aspergillus fumi...
ZP_00415757 187 TTLVPLTILCSLkara------anpkRVDIRELFVtapeqerhyf------lrggllnriFLGLDKFARTldrw---mpk 251 Azotobacter vine...
ZP_00463675 179 TTMVPLLVLCSLkara------rnprNVSIRELFVtppeqerhyf------ppargmrrlFLALDRTIRPiepl---lpk 243 Burkholderia cen...
YP_192650   189 AVIAPLLVLNALrpka------inprGIHVQELFVkppsevkdwir----gpyrsvwgrfFKHLDSALRPvlpl---ipr 255 Gluconobacter ox...
ZP_00271002 186 TVMTPLMILYSRrara------vnprGIGVRELFRrdpevirdwlk----nptghwigdaLIQIDKVLRViepa---ihw 252 Rhodospirillum r...
Feature 1                                                                                       
1SQC        235 PFRRAAEIRALDWLLErqagdgswggiQPPWFYALIALKILdm-tqHPAFIKGWEGLELYgveld------yggwMFQAS 307 Alicyclobacillus...
EAA49134    258 FLRRWAVSSSIQWTLDhqepsgdwggiYPPMHHNILALMLEgwsqdDPVIQRGIGACQRFlaedp------ahgkWMQPS 331 Magnaporthe gris...
YP_106607   243 YTRERAIRQAVAFVDErlngedglgaiYPAMANAVMMYAALgypedHPNRAIARRSIEKLlvvg-------eqeaYCQPC 315 Burkholderia mal...
YP_113312   251 AVRKKATQKAFDWFTArlngvdglgaiFPAMVNAYEALDFLgvppdDERRRLARESIDRLlvfq-------gdsvYCQPC 323 Methylococcus ca...
P33990      244 NMRAKAIHSCVHFVTErlngedglgaiYPAIANSVMMYDALgy-peNHPERAIARRAVEKlmvldgtedqgdkevYCQPC 322 Zymomonas mobilis
EAL84865    266 PFRRFALQKCVDWILEhqedmgdigdiMPPLHGAMLALRLEgy-plHSGPIHRGLEAIERfayrd------kqgkRIQTT 338 Aspergillus fumi...
ZP_00415757 252 SLRQHAIRKAEAWFLPrmngedglgaiFPPMVNCYEAMILLgypkdHPARKTCLRSIQKLivhrd------dgsaYCQPC 325 Azotobacter vine...
ZP_00463675 244 RLRQRAIRHAEAWCAErmngedglggiFPPIVYSYQMMQVLgy-pdDHPLRRDCENALEKllvtr-----pdgsmYCQPC 317 Burkholderia cen...
YP_192650   256 SVHKKALKAASDFIEPrlsrg-glgaiYPAMANVVMMYRAQgvpdsDPRAKTAWDAIQDLlvdh-------gdeiYCQPC 327 Gluconobacter ox...
ZP_00271002 253 AFRDRAEKWALDFIEErlngrdglggiYPAIANTLMAYHTLgyakdHPGYRIAREAVDGLctph-------akgeYVQPC 325 Rhodospirillum r...
Feature 1                                                                                       
1SQC        308 ISPVWDTGLAVLALraaglp--------------adhdrLVKAGEWLLdrqi--tvpGDWAVKRPnl-kpGGFAFQFDNV 370 Alicyclobacillus...
EAA49134    332 VSPVWDTFLMIRAVadaktt-------------ddadklLVKPVDWVLaqqidddhiGDWRIYRPdi-paGGFAFEYFNK 397 Magnaporthe gris...
YP_106607   316 LSPVWDTSLAAHALletgda--------------rareaAVRGLDWLVprqi-ldvrGDWISRRPhv-rpGGWAFQYANA 379 Burkholderia mal...
YP_113312   324 VSPIWDTALTSLTLqevarhta----------dlrldaaLSKGLKWLAskqidkdapGDWRVNRAgl-egGGWAFQFGND 392 Methylococcus ca...
P33990      323 LSPIWDTALVAHAMlevggd--------------eaeksAISALSWLKpqqi-ldvkGDWAWRRPdl-rpGGWAFQYRND 386 Zymomonas mobilis
EAL84865    339 VSAFWDTSLMLIALgdagm---------------askpwLTRSLGWLQqhqr-lgnyGDWKVNNHgl-kaGGFSFGYFNT 401 Aspergillus fumi...
ZP_00415757 326 VSPVWDTAWSAMALihsgdd-------------tatqtaIARAGDWLVqrqe-ldcrGDWEAQAPqa-apGGWAFQYANG 390 Azotobacter vine...
ZP_00463675 318 LSPVWDTAWSTMALeqargvaapetgdtasgalrdldgrIARAYDWLAtrqv-ndlcGDWIENAPadvepGGWAFQYANP 396 Burkholderia cen...
YP_192650   328 VSPVWDTGLSGLAMieaasgpag-------tktketlaaLKKSAEWLRehqi-ldvkGDWAINAPdl-rpGGWAFQYEND 398 Gluconobacter ox...
ZP_00271002 326 LSPVWDTCLASHAIqeagqs--------------agdraVDQSNAWLRerqv-ldvvGDWKSNRGhl-rpGGWAFQYNNP 389 Rhodospirillum r...
Feature 1            #                                                                          
1SQC        371 YYPDVDDTAVVVWALntlrlpd-----errrrdaMTKGFRWIVGMQSSNGGWGAYDvdntsdlpnhiPFCDFGEVTDPPS 445 Alicyclobacillus...
EAA49134    398 WYPDVDDTAVGVVALmrhdps-------lvnddrILKAAAWTLGMQNRDFGWAAFDadnnafylhatPFSDMDSLTDSST 470 Magnaporthe gris...
YP_106607   380 HYPDVDDTAVVAMAMdrvakldr----tdayresIARAREWVVGMQSSDGGWGAFEpentqyylnniPFSDHGALLDPPT 455 Burkholderia mal...
YP_113312   393 YYPDVDDSAVVAHALlgsedp--------sfddnLRRAANWIAGMQSRNGGFGAFDadntyyylnsiPFADHGALLDPPT 464 Methylococcus ca...
P33990      387 YYPDVDDTAVVTMAMdraaklsd---lrddfeesKARAMEWTIGMQSDNGGWGAFDannsytylnniPFADHGALLDPPT 463 Zymomonas mobilis
EAL84865    402 WYPDVDDTASAVLAMirqder-------lvhsasVLDALNWLLGMQNTDGGWGAFDrdndkhflnkiPFSDMDALCDPST 474 Aspergillus fumi...
ZP_00415757 391 YYPDIDDTALVAALLhisdrrrg---qpgqhafnIDRAVDWMLALQSRNGGFAAFDadnthyylnaiPFADHGALLDPPT 467 Azotobacter vine...
ZP_00463675 397 YYPDIDDTALVTAMLdrrgrthraadgthpyasrVARALDWMRGLQSRNGGFAAFDadcdrmylnaiPFADHGALLDPPT 476 Burkholderia cen...
YP_192650   399 YYPDVDDTAVVAMLLhrvdpe--------nsreaISRAREWIIGMQSTNGGWGAFDidndhellnhiPFSDHGALLDPPT 470 Gluconobacter ox...
ZP_00271002 390 HYPDVDDTAVVVMALarsked-------eanreaIARAEEWIIGMQSSNGGWGAFDaenehdflnhvPFADHGALLDPPT 462 Rhodospirillum r...
Feature 1                                                                                       
1SQC        446 EDVTAHVLECFGSFGYDdaw----------------kviRRAVEYLKREQkpDGSWFGRWGVNYLYGTGAVVSALKavgi 509 Alicyclobacillus...
EAA49134    471 PDVTGHVLEMLGLMYRLerqgrvkspemlaflsqshgacDRGLGYLLGSQeaFGGWYGRWGVNYIFGTSAALCALAyfad 550 Magnaporthe gris...
YP_106607   456 ADVSGRCLSMLAQFGETsass---------------epaRRALDYMLKEQepDGSWYGRWGMNYIYGTWTALCSLNaagl 520 Burkholderia mal...
YP_113312   465 ADVSARCAMFLARWVNRqpel--------------rpvlERTIDYLRREQeaDGSWFGRWGTNYIYGTWSVLLAYEaagv 530 Methylococcus ca...
P33990      464 VDVSARCVSMMAQAGISitd----------------pkmKAAVDYLLKEQeeDGSWFGRWGVNYIYGTWSALCALNvaal 527 Zymomonas mobilis
EAL84865    475 PDVTGHVLEAFGLFLALskadala--------drvvaasRRAIRYLSDTHvlSRGWYGRWGCNYIYGTSAVLCALAyfgs 546 Aspergillus fumi...
ZP_00415757 468 EDVSGRVAACLGILKRDqdr----------------dglRRCIDYLRTTQqpDGSWWGRWGSNYIYGTWSALSGLAlage 531 Azotobacter vine...
ZP_00463675 477 EDVSGRVLLCFGVTKRAadr----------------aslARAIDYVKRTQqpDGSWWGRWGTNYLYGTWSVLAGLAlage 540 Burkholderia cen...
YP_192650   471 ADVSARCISFLAQLGDPddr----------------pviLKAIEYLRSEQepEGCWFGRWGTNYIYGTWSVLCALNiagv 534 Gluconobacter ox...
ZP_00271002 463 VDVSARCLGMLAQLGRPktd----------------pvvARGLDYLWREQeaDGSWFGRWGTNYIYGTWSALNAFNavew 526 Rhodospirillum r...
Feature 1                                                                                       
1SQC        510 d--------trepyIQKALDWVEQHQNpDGGWGEDCRSYedpay--agkgASTPSQTAWALMALIAggraeseaARRGVQ 579 Alicyclobacillus...
EAA49134    551 rk-------gvrgkMAAGADWLRSRQNpDGGWGELLESYdnkal--agrgRSTPSQTAWALQGLLEledprgevVEAGVN 621 Magnaporthe gris...
YP_106607   521 g--------hddprVKRAAQWLLSIQNaDGGWGEDGDSYkldyr-gyeraPSTSSQTAWALLGLMAagevdnpaVARGVD 591 Burkholderia mal...
YP_113312   531 p--------nddpsVRRAVAWLKSIQReDGGWGEDNFSYhdpsy-rgrfhTSTAFQTGFALIALMAageagspeVQAGVD 601 Methylococcus ca...
P33990      528 p--------hdhlaIQKAVAWLKTIQNeDGGWGENCDSYaldys-gyepmDSTASQTAWALLGLMAvgeanseaVTKGIN 598 Zymomonas mobilis
EAL84865    547 endalsgvrvmkdaINQAIRWLETVQNpDGGWGETVDSYkdpsr--agsgPSTASQTAWAIMALLPylppstevIQRGME 624 Aspergillus fumi...
ZP_00415757 532 d--------lrqpyLRKSVDWLRTRQHpDGGWGETNDSYidphlagtnagISTPHSTAWAVLAQLAmgevesdsVRRGIA 603 Azotobacter vine...
ZP_00463675 541 d--------ksqpyITRALDWLRARQHaDGGWGETNDSYldpklagtnggESTSNCTAWALLAQMAfgdcesdsVKRGIA 612 Burkholderia cen...
YP_192650   535 p--------hddpmVLRAVNWLESVQRpDGGWGEDCATYeggta--gtykKSLPSQTAWAVLALMAvgrreseaVKRGVA 604 Gluconobacter ox...
ZP_00271002 527 d--------mtdprICKAVDWLKSRQRdDGGWGEDCATYwkerr--svskASTPSQTAWAVLGLMAagevdspeVERGIR 596 Rhodospirillum r...
Feature 1                                                             
1SQC        580 YLVe---------tQRPDGGWDepYYTGTGFPgdFYLGYTMYRHVFPTLALGRY 624 Alicyclobacillus acidocaldarius
EAA49134    622 WLLrhqvtspsrnsGRVSATWPedDYTATGFPghFYLKYELYCHYFPMMALARY 675 Magnaporthe grisea 70-15
YP_106607   592 YLLg---------tQREHGLWDetRFTATGFPrvFYLRYHGYRKFFPLWALARY 636 Burkholderia mallei ATCC 23344
YP_113312   602 YLLr---------qQRPDGFWNdeCFTAPGFPrvFYLKYHGYDKFFPLWALARY 646 Methylococcus capsulatus str. Bath
P33990      599 WLAq---------nQDEEGLWKedYYSGGGFPrvFYLRYHGYSKYFPLWALARY 643 Zymomonas mobilis
EAL84865    625 YLLrtq-----tktASQGATWHekAYTATGFPkyFYMGYSLYAHYFPMMALGRY 673 Aspergillus fumigatus Af293
ZP_00415757 604 FLLa---------cQQTDGLWShpSHNAPGFPrvYYLKYHGYAAYFPLYALARY 648 Azotobacter vinelandii AvOP
ZP_00463675 613 YLQs---------vQQEDGFWWhrSHNAPGFPriFYLKYHGYTAYFPLWALARY 657 Burkholderia cenocepacia HI2424
YP_192650   605 YLVs---------qQNEKGEWQeeAYNAVGFPkvFYLRYHGYKQFFPLTALARY 649 Gluconobacter oxydans 621H
ZP_00271002 597 YLLe---------aPRDGGKWEeeLYNAVGFPriFYLRYHGYSAYFPLWALARY 641 Rhodospirillum rubrum

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