Conserved Protein Domain Family
CD53_like_LEL

?
cd03164: CD53_like_LEL 
Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.
Statistics
?
PSSM-Id: 239417
Aligned: 7 rows
Threshold Bit Score: 141.078
Created: 4-Nov-2005
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
dimer interface
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Comment:dimeric assembly observed in the crystal is predicted to resemble quaternary structure of intact CD81 at the cell surface

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1      #    #   # ##  #                 #  ##  ##                                     
CAH73292  104 FVYEQKLNEYVAKGLTDSIHRYHsd----nsTKAAWDSIQSFLQCCGINGTSDWts-gPPASCPSDr----------KVE 168 human
AAH92329  104 YVYEKQLDNYVKETLTNSFEQNVkr-----nSSEAWDMIQQNLQCCGINGTHDWgk-dIPNSCCPNsncs---srnvFTV 174 African clawed frog
CAG01310   92 LLYQNQVGEMLKKELRDGLEKAKaqnrsspdVFYEWDLLQNNLRCCGLNNRTDWgs-iVPHSCCLKdcntt--tpeyKKE 168 Tetraodon nigrovir...
XP_852492 100 FVYEQKLNDYVSESLTDSIKQYHld----nsTRATWDSIQSVLQCCGVNGTSDWng-hPPKSCPSDp----------QVQ 164 dog
NP_036655 104 FVYEKKINTLVAEGLNDSIQHYHsd----nsTRMAWDFIQSQLQCCGVNGSSDWis-gPPSSCPSGa----------DVQ 168 Norway rat
AAH84360  104 FVYEKQLDKYVRERLTNSFEQNLkh-----nSSETWHMIQRNLQCCGINGSEDWmkkeLHSSCCPSktnsncslsdsFPV 178 African clawed frog
AAH53225  101 LMYESKIENFIKDDLVDGLNQSIknrk-qhnTTDDWDKVQETFGCCGIQNATDWqg-fVPQSCNISgt-------snWHK 171 zebrafish
Feature 1                       
CAH73292  169 GCYAKARLWFHSNFLYIG 186 human
AAH92329  175 GCSEALKKWFDNNFLYVG 192 African clawed frog
CAG01310  169 GCLTVMMNLFEDNFLTTG 186 Tetraodon nigroviridis
XP_852492 165 GCYAKVKLWFHSNFLHIG 182 dog
NP_036655 169 GCYKKGQAWFHSNFLYIG 186 Norway rat
AAH84360  179 GCSEALKKWFENNFLYFG 196 African clawed frog
AAH53225  172 GCFKLLENSFESNLLSTG 189 zebrafish

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap