Conserved Protein Domain Family
MATH_TRAF1

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cd03779: MATH_TRAF1 
Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediated signaling events. TRAF1 contains one zinc finger and one TRAF domain. The TRAF domain can be divided into a more divergent N-terminal alpha helical region (TRAF-N), and a highly conserved C-terminal MATH subdomain (TRAF-C) with an eight-stranded beta-sandwich structure. TRAF-N mediates trimerization while TRAF-C interacts with receptors.
Statistics
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PSSM-Id: 239748
Aligned: 3 rows
Threshold Bit Score: 307.972
Created: 18-May-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:TNFR binding site
Evidence:
  • Comment:TNFR = Tumor Necrosis Factor Receptor
  • Comment:Based on the binding of TRAF2, TRAF3 and TRAF6 to peptides of TNFR-2 and CD40, members of the TNFR superfamily.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                   # #   #          # 
BAC03449   202 GTFLWKITNVTRRches--------------------acgRTVSLFSPAFYTAKYGYKLCLRLYLNGDGTGKRTHLSLFI 261  human
XP_415406  363 GVFLWKITDVNQKlqds--------------------vtgRVVSLYSPAFYTAKYGYKVCLRIYLNGDGMGKGTHVSLFF 422  chicken
XP_701178  326 GTFYWRVCDVSQKqreaansqkisqyspgvltkahhashkNDNALCFSAFYTARYGFKVCLRLYLNGDGAGKGSHISLFF 405  zebrafish
Feature 1                                         ##                ####                       
BAC03449   262 VIMRGEYDALLPWPFRNKVTFMLLDQNNREHAIDAFRPDLSSASFQRPQSETNVASGCPLFFPLSKLQSPKHa------- 334  human
XP_415406  423 VVMKGDYDALLPWPFRHKVTFMLLDQNNREHIIDAFRPDLASASFQRPVNDMNVASGCPTFLPLTKLQSPKHayaqlars 502  chicken
XP_701178  406 VIMKGEYDPILSWPFKHKVTFFLLDQNQREHVIDAFRPDLSSMSFHQPVSDMNVASGCPLFFPLKKLRSPKHa------- 478  zebrafish
Feature 1                     
BAC03449   335 -YVKDDTMFLKCIVE 348  human
XP_415406  503 sWTSDGTTPHHSHTS 517  chicken
XP_701178  479 -YCKDDTIYIKCVVD 492  zebrafish

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