1MMR,1KAP,1IAB


Conserved Protein Domain Family
ZnMc_MMP_like

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cd04268: ZnMc_MMP_like 
Click on image for an interactive view with Cn3D
Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Statistics
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PSSM-Id: 239796
Aligned: 48 rows
Threshold Bit Score: 69.0623
Created: 23-May-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active site
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:consensus motif: HEXXHXUGUXH U= bulky hydrophobic
  • Comment:coordinates zinc, contains catalytic Glu
  • Citation:PMID 8253063

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                       
1MMR         12 SKVVTYRIvsytrdlphiTVDRLVSKALNMWGKei-pLHFRKVvwg--taDIMIGFargahgdsy--------pfdgpgn 80  human
ZP_01164433  40 QNSATIYVnis-----npVLKNATETAIAQWNNtk-aFTFKIVndk--naNISVSAvndpnngaa-------gltntsmn 104 Lactobacillus re...
AAX82610    101 TNQATVYVntn-----naQLDAATNTAIQSWNQtg-aFTFKPVnnq-skaDIVVTTmnrsdsnaa-------gltktssn 166 Lactobacillus re...
CAD65219     41 DKQAANYQdls----ssdYYKDVWNNATASWKKa--gFTWTKAat----aKTTVSSydgssdmtla------gynsvsyn 104 Lactobacillus pl...
CAC96534     39 AKNFKVYIngs-----arGYRNIIINGAKSWNPspylNTVTMGndv--kpNFTVSSsntnkgsvl-------avcnttyy 104 Listeria innocua
CAD63000     42 HAQVTYVIqa------ssYERHVYQAAIQAWNAtg-hFKFVPGtta--hhQITLGTsnatsgqyyr------lagitfst 106 Lactobacillus pl...
AAV43216     82 TASIFIYInq------ndPNYQTVQDAIKAWNAtk-vIKFKQAfny-qkaQIIVTAhdygdtsw---------aglteip 144 Lactobacillus ac...
CAD63211     83 SRVITYRItsd-----skVYRAIWLRAVERWNNtn-aVRLVEAkdq-akaQITLGEsedetet-----------tgseig 144 Lactobacillus pl...
CAD65172    117 KKTYYYSFdhn----vpkAARQVFLEAVATYNQtg-lVHLVAGqasgsqnSVTFSMyhkkmttgatsvelghggpditkq 191 Lactobacillus pl...
ZP_00322674  72 NKYYYSYQagt-----pdAVQNVFKRAIATYNAtg-iVKIVPGaeqgwlnHLELGTyrkn-----------------vpl 128 Pediococcus pent...
Feature 1                                                                  ##  #     #          
1MMR         81 tLAHAFapgt-------------------glgGDAHFDederwtdg-sslginflYAATHELGHSLGMGHSsd-pNAVMY 139 human
ZP_01164433 105 sATGYYl------------------------hATVELNsyyllnpafgysqerivNTAEHELGHAIGLQHTn--kISVMQ 158 Lactobacillus re...
AAX82610    167 sLTRRFm------------------------hATVYLNtyyltdpsygysqerivNTAEHELGHAIGLDHTn--aVSVMQ 220 Lactobacillus re...
CAD65219    105 kSTGEIt------------------------sSKVRINravfekyn--ytkaertNVAEHELGHALGIGHNntdsVSVMN 158 Lactobacillus pl...
CAC96534    105 kSNKLIvk----------------------neITLYKGfrsls-------nnhkiETVAHEFGHGFGLGHVkt-rNAIML 154 Listeria innocua
CAD63000    107 gYTNGYyt-----------------------kAQVYLLtrnfvryh--ysytdqvHVAEHELGHTIGLEHSrd-rHSVML 160 Lactobacillus pl...
AAV43216    145 dTPRGYly-----------------------gSVVYLNnfylrqs----tpqvalSVAEHELGHAIGLQHNdt-qPSVMN 196 Lactobacillus ac...
CAD63211    145 rTWRTYyqsgsqgt-----------twmdsakCVIYTNrfpasnh----sveyklSVATHELGHALGLEHEnn-kSAVMY 208 Lactobacillus pl...
CAD65172    192 iSWRGTqyw---------------------nnATASLNgsyas--------afskSVAVHELGHALGLDHSss-tESVMY 241 Lactobacillus pl...
ZP_00322674 129 nQSRTIelgiggpkimeqtgvvsrianhasakLNIYYNkav------------sqAVATHEVGHALGLDHSqa-eDSVMY 195 Pediococcus pent...
Feature 1                                
1MMR        140 PtygngdpqnfKLSQDDIKGIQKLY 164 human
ZP_01164433 159 Pags-----yyPIQSRDIEAVKALY 178 Lactobacillus reuteri JCM 1112
AAX82610    221 Pags-----fyTIQPDDVQAVQKLY 240 Lactobacillus reuteri
CAD65219    159 Panr-----yyTIQACDINGMKARY 178 Lactobacillus plantarum WCFS1
CAC96534    155 Dkgfi---nktKPQKDDFNGIKALY 176 Listeria innocua
CAD63000    161 Adnr-----ynGISAADSAAVRLRY 180 Lactobacillus plantarum WCFS1
AAV43216    197 Ssvte--qnayTIQPCDIAAVKAIY 219 Lactobacillus acidophilus NCFM
CAD63211    209 Yqsh----raaHITTREISTLKQMY 229 Lactobacillus plantarum WCFS1
CAD65172    242 Pvsq----gksTLSSADIAALQTIY 262 Lactobacillus plantarum WCFS1
ZP_00322674 196 Pldr----eqtALSPADLAGLKSIY 216 Pediococcus pentosaceus ATCC 25745

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