1MOQ,1J5X,1JXA,2AML,2CB0,2DEC,2J6H,2POC


Conserved Protein Domain Family
SIS_GlmS_GlmD_1

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cd05008: SIS_GlmS_GlmD_1 
Click on image for an interactive view with Cn3D
SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) contains two SIS domains and catalyzes the deamination and isomerization of glucosamine-6-phosphate into fructose-6-phosphate with the release of ammonia; in presence of high ammonia concentration, GlmD can catalyze the reverse reaction.
Statistics
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PSSM-Id: 240141
Aligned: 226 rows
Threshold Bit Score: 73.3002
Created: 29-May-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitedimer interface
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1M0Q: E. coli glucosamine 6-phosphate synthase binds glucosamine-6-phosphate, contacts calculated at 3.5A
    View structure with Cn3D
  • Structure:1JXA: E. coli glucosamine 6-phosphate synthase binds glucose 6-phosphate, contacts calculated at 3.5A
    View structure with Cn3D
  • Structure:2J6H: E. coli glucosamine 6-phosphate synthase binds frutose-6-phosphoate, contacts calculated at 3.5A
    View structure with Cn3D
  • Structure:2DEC: Pyrococcus horikoshii Ph0510 protein binds ethylene glycol and Na+, contacts calculated at 3.5A
    View structure with Cn3D
  • Citation:PMID 9739095

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               ##                                                         ###          
1MOQ         54 HIQILACGTSYNSGMVSRYWFESla---giPCDVEi-----aSEFRYrksa------vrrNSLMITLSQSGETADTLAGL 119 Escherichia coli
NP_978220    58 RVIFTGAGTSAFVGDTIVPYVKRitdlkkmHIESIpttnivsSPYYYlqp--------diPTILVSFARSGNSPESVAAV 129 Bacillus cereus ...
YP_074391    52 RVLFAGAGSSAYVGETVLPFVKRhgdehafEFQVTpttslvaDPTSYlra--------dqPTLLVSFARSGNSPESVATV 123 Symbiobacterium ...
YP_446126    56 RILLTGAGTSHYVGLSVVDLLRRrf---dtPCESRpttritpNPDLFfre--------gePTLMVHFARSGNSPESRAVL 124 Salinibacter rub...
ZP_01156503  44 EVWFCGAGTSAFIGDIIVAGLEGqg----aRMRSVattdlvsRPHAYls---------drRPLVVNFGRSGGSPETLGTL 110 Oceanicola granu...
YP_878790    59 KIVITGAGSSAFVGNSVVSYLNAke---niKIEAIattdivsHPFYYlkk--------dePTLLISCARSGNSPESTAAV 127 Clostridium novy...
ZP_01643180  59 RVLFTGAGSSGFIAEMVADAINAqw---paDVRVVhttslltHPALYlqr--------erPTLLVSFGRSGSSPESVAAV 127 Stenotrophomonas...
ZP_01773308  58 SVVFTGAGTSDYVGDTCAPYLRHagntdlyDFKPIattdivsAPRDFlra--------edPTLVVSFARSGNSPESLAAV 129 Collinsella aero...
ZP_02040466  43 KIYFVGNGSPYYAGYTLSFAAEKlm---gaDAVAIp-----aGVFHNhcvfnrakqyandEILLVCPAESGRSKGQVDAA 114 Ruminococcus gna...
EDO69480     59 RVLFTGAGSSGFIADMVADRINAqw---paDVRAVhttslltHPALYlqh--------drPTLLVSFARSGSSPESVAAV 127 Dehalococcoides ...
Feature 1                                                                         
1MOQ        120 RLSKelg---ylgSLAICNv--pGSSLVRESDLALMTnagteiGVASTKAFTTQLTVLLMLVAKLS 180 Escherichia coli
NP_978220   130 QLGEqiih-svyhIILTCNee-gNLAKQFQHKENAFVmympqeANDQGFAMTGSFTSMMLTALMLC 193 Bacillus cereus ATCC 10987
YP_074391   124 HLAKqlvp-dlyqIIITCApd-gNLARQADGDERSLLwlmpqrANDQAFAMTGSFTCMVLAALLLF 187 Symbiobacterium thermophilum I...
YP_446126   125 EGGLecmgeagrhLVITCNsdgtLAELARAHPDRVHLlvlpddTNDQGLAMTSSYTSMVVASQALA 190 Salinibacter ruber DSM 13855
ZP_01156503 111 DALDvlap-daprLNVTCNp--dGALARREATGPCGVvllptaTHDAGFAMTSSFSTMLLTALTLF 173 Oceanicola granulosus HTCC2516
YP_878790   128 TLAEkivd-dishLIITCNse-gKLALHAKRNYNSFLllmpeeSNDKGFAMTGSFSTMLLSCLLIF 191 Clostridium novyi NT
ZP_01643180 128 DRVRsdvd-darfLDITCNad-gELARRGAGRADTCTllmpsaSCDRAFAMTSSLTCMLLAALTVF 191 Stenotrophomonas maltophilia R...
ZP_01773308 130 AVAKelvh-nvkfLNITCApe-gKLAVESADDPNALTlli-prANDKGFAMTGSYSCMTLLSTLIF 192 Collinsella aerofaciens ATCC 2...
ZP_02040466 115 HRAKevg----ikVMSTTLn--pNGILAGYSDIVLTKpg---qHEQAMAATKGQTMGILLIFLNFL 171 Ruminococcus gnavus ATCC 29149
EDO69480    128 ELLRaqvd-darfLDITCNpe-gELARRGAGREDTCTllmpaaSCDRAFAMTSSLSCMLLAALCVF 191 Dehalococcoides sp. VS

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